On 9/14/21 5:43 PM, Vincent Carey wrote: > I spent some time with the destiny package this morning. It is the first package I've come across that composes > vignettes as jupyter notebooks. This is interesting and it is nice that R can support this. To make progress, I found that I > needed to enhance my latex/font setup with tinytex::tlmgr_install for these packages Interesting. > [..] > which seems solvable but I am out of time. I admit, I do not get that error on building it as a Debian package > It is mainly up to the destiny developer/maintainer to solve these problems, and as Lori Kern noted > the package is currently slated for removal. ACK. > If you are willing to work with the source to get it to build for your use, you can clone the source > from git (not github) at https://git.bioconductor.org/packages/destiny <https://git.bioconductor.org/packages/destiny>, until it is removed. Thanks for that link, Vincent! @Andreas, I cloned that repository, and made a tarball with `$git archive` and on importing that one, it builds for me. But I'm not sure if this is good enough to upload, I'm a bit suspicious of the diff, I admit. It seems that a whole lot of jupyter notebooks are being filtered out. I'm not certain if this is OK to push either. I'm just pasting what I did. <Screenshot> $ git clone https://git.bioconductor.org/packages/destiny $ cd destiny $ git archive -o ~/packages/destiny/r-bioc-destiny_3.7.1.orig.tar.gz HEAD $ cd ~/packages/destiny/r-bioc-destiny $ gbp import-orig --pristine-tar ../r-bioc-destiny_3.7.1.orig.tar.gz $ gbp dch -a $ <Build normally, as you do with pbuilder/sbuild/cowbuilder/.....> </Screenshot> Can you try this and let me know if you think it is sensible? One more thing I noticed is: -git_url: https://git.bioconductor.org/packages/destiny -git_branch: RELEASE_3_12 -git_last_commit: a7323c8 -git_last_commit_date: 2020-10-27 -Date/Publication: 2020-10-27 -Packaged: 2020-10-27 23:42:38 UTC; biocbuild -Author: Philipp Angerer [cre, aut] (<https://orcid.org/0000-0002-0369-2888>), - Laleh Haghverdi [ctb], - Maren Büttner [ctb] (<https://orcid.org/0000-0002-6189-3792>), - Fabian Theis [ctb] (<https://orcid.org/0000-0002-2419-1943>), - Carsten Marr [ctb] (<https://orcid.org/0000-0003-2154-4552>), - Florian Büttner [ctb] (<https://orcid.org/0000-0001-5587-6761>) -Maintainer: Philipp Angerer <philipp.angerer@helmholtz-muenchen.de> +PackageStatus: Deprecated So I guess we will need to patch in a "git_branch: RELEASE_3_13" manually. Let me know what you think. Cheers, -- Nilesh Patra Debian Developer, Uploading ⢀⣴⠾⠻⢶⣦⠀ ⣾⠁⢠⠒⠀⣿⡁ ⢿⡄⠘⠷⠚⠋ nilesh@debian.org / nileshpatra.info / tchncs.de ⠈⠳⣄
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