Package rpact has issues in autopkgtest
Hi Friedrich,
when trying to upgrade the rpact package in Debian the test suite has
some failures:
══ Failed tests ════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════
── Failure (test-class_analysis_dataset.R:2190:2): Illegal creation of a dataset of means with subsets: wrong deselection (one group) ──
`getDataset(S1 = S1, R = R)` threw an error with unexpected message.
Expected match: "Conflicting arguments: if S1 is deselected (NA) then R also must be deselected (NA) but, e.g., 'sampleSize' R is 21 in group 1 at stage 2"
Actual message: "Conflicting arguments: if S1 is deselected (NA) then R also must be deselected (NA) but, e.g., ‘sampleSize’ R is 21 in group 1 at stage 2"
Backtrace:
█
1. ├─testthat::expect_error(...) test-class_analysis_dataset.R:2190:8
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat:::.capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─rpact::getDataset(S1 = S1, R = R)
7. └─rpact:::.getEnrichmentDatasetFromArgs(...)
8. └─rpact:::.validateEnrichmentDataFrame(dataFrame)
── Failure (test-class_analysis_dataset.R:2331:2): Illegal creation of a dataset of means with subsets: wrong deselection (three subsets) ──
`getDataset(S1 = S1, S2 = S2, S12 = S12, R = R)` threw an error with unexpected message.
Expected match: "Conflicting arguments: if S2 is deselected (NA) then R also must be deselected (NA) but, e.g., 'sampleSize' R is 19 in group 1 at stage 2"
Actual message: "Conflicting arguments: if S2 is deselected (NA) then R also must be deselected (NA) but, e.g., ‘sampleSize’ R is 19 in group 1 at stage 2"
Backtrace:
█
1. ├─testthat::expect_error(...) test-class_analysis_dataset.R:2331:8
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat:::.capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─rpact::getDataset(S1 = S1, S2 = S2, S12 = S12, R = R)
7. └─rpact:::.getEnrichmentDatasetFromArgs(...)
8. └─rpact:::.validateEnrichmentDataFrame(dataFrame)
...
12. └─rpact:::.getEnrichmentDatasetFromArgs(...)
13. └─rpact:::.validateEnrichmentDataFrame(dataFrame)
── Failure (test-class_analysis_dataset.R:2618:2): Illegal creation of a dataset of survival data with subsets: wrong deselection (one group) ──
`getDataset(S1 = S1, R = R)` threw an error with unexpected message.
Expected match: "Conflicting arguments: if S1 is deselected (NA) then R also must be deselected (NA) but, e.g., 'overallEvent' R is 38 in group 1 at stage 2"
Actual message: "Conflicting arguments: if S1 is deselected (NA) then R also must be deselected (NA) but, e.g., ‘overallEvent’ R is 38 in group 1 at stage 2"
Backtrace:
█
1. ├─testthat::expect_error(...) test-class_analysis_dataset.R:2618:8
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat:::.capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─rpact::getDataset(S1 = S1, R = R)
7. └─rpact:::.getEnrichmentDatasetFromArgs(...)
8. └─rpact:::.validateEnrichmentDataFrame(dataFrame)
[ FAIL 6 | WARN 0 | SKIP 187 | PASS 1998 ]
Error: Test failures
Any hint how to work around this?
Kind regards
Andreas.
--
http://fam-tille.de
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