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Re: Package rpact has issues in autopkgtest

Hi Andreas,

Thank you for the problem report.

We first heard of this issue a week ago. The problem occurs if you enable fancy quotes.
Please execute
options(useFancyQuotes = FALSE)
before you run the tests.

In the next version of rpact we will handle that inside the test files.

Best regards,

Friedrich


  Friedrich Pahlke, Ph.D.
  RPACT

  phone  +49 451 1217116
  mobile +49 151 72928193
  fax    +49 451 1216993
  e-mail friedrich.pahlke@rpact.com

  CEOs: Prof. Dr. Gernot Wassmer, Dr. Friedrich Pahlke
  VAT-ID (USt-ID): DE312258359
  District Court Luebeck
_______________________________________________________
  RPACT - R Programming for Adaptive Clinical Trials
  www.rpact.com

Am 21.09.2021 um 11:40 schrieb Andreas Tille:

Hi Friedrich,

when trying to upgrade the rpact package in Debian the test suite has
some failures:


══ Failed tests ════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════
── Failure (test-class_analysis_dataset.R:2190:2): Illegal creation of a dataset of means with subsets: wrong deselection (one group) ──
`getDataset(S1 = S1, R = R)` threw an error with unexpected message.
Expected match: "Conflicting arguments: if S1 is deselected (NA) then R also must be deselected (NA) but, e.g., 'sampleSize' R is 21 in group 1 at stage 2"
Actual message: "Conflicting arguments: if S1 is deselected (NA) then R also must be deselected (NA) but, e.g., ‘sampleSize’ R is 21 in group 1 at stage 2"
Backtrace:
     █
  1. ├─testthat::expect_error(...) test-class_analysis_dataset.R:2190:8
  2. │ └─testthat:::quasi_capture(...)
  3. │   ├─testthat:::.capture(...)
  4. │   │ └─base::withCallingHandlers(...)
  5. │   └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
  6. └─rpact::getDataset(S1 = S1, R = R)
  7.   └─rpact:::.getEnrichmentDatasetFromArgs(...)
  8.     └─rpact:::.validateEnrichmentDataFrame(dataFrame)
── Failure (test-class_analysis_dataset.R:2331:2): Illegal creation of a dataset of means with subsets: wrong deselection (three subsets) ──
`getDataset(S1 = S1, S2 = S2, S12 = S12, R = R)` threw an error with unexpected message.
Expected match: "Conflicting arguments: if S2 is deselected (NA) then R also must be deselected (NA) but, e.g., 'sampleSize' R is 19 in group 1 at stage 2"
Actual message: "Conflicting arguments: if S2 is deselected (NA) then R also must be deselected (NA) but, e.g., ‘sampleSize’ R is 19 in group 1 at stage 2"
Backtrace:
     █
  1. ├─testthat::expect_error(...) test-class_analysis_dataset.R:2331:8
  2. │ └─testthat:::quasi_capture(...)
  3. │   ├─testthat:::.capture(...)
  4. │   │ └─base::withCallingHandlers(...)
  5. │   └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
  6. └─rpact::getDataset(S1 = S1, S2 = S2, S12 = S12, R = R)
  7.   └─rpact:::.getEnrichmentDatasetFromArgs(...)
  8.     └─rpact:::.validateEnrichmentDataFrame(dataFrame)
...
  12.   └─rpact:::.getEnrichmentDatasetFromArgs(...)
  13.     └─rpact:::.validateEnrichmentDataFrame(dataFrame)
── Failure (test-class_analysis_dataset.R:2618:2): Illegal creation of a dataset of survival data with subsets: wrong deselection (one group) ──
`getDataset(S1 = S1, R = R)` threw an error with unexpected message.
Expected match: "Conflicting arguments: if S1 is deselected (NA) then R also must be deselected (NA) but, e.g., 'overallEvent' R is 38 in group 1 at stage 2"
Actual message: "Conflicting arguments: if S1 is deselected (NA) then R also must be deselected (NA) but, e.g., ‘overallEvent’ R is 38 in group 1 at stage 2"
Backtrace:
     █
  1. ├─testthat::expect_error(...) test-class_analysis_dataset.R:2618:8
  2. │ └─testthat:::quasi_capture(...)
  3. │   ├─testthat:::.capture(...)
  4. │   │ └─base::withCallingHandlers(...)
  5. │   └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
  6. └─rpact::getDataset(S1 = S1, R = R)
  7.   └─rpact:::.getEnrichmentDatasetFromArgs(...)
  8.     └─rpact:::.validateEnrichmentDataFrame(dataFrame)

[ FAIL 6 | WARN 0 | SKIP 187 | PASS 1998 ]
Error: Test failures


Any hint how to work around this?

Kind regards

    Andreas.
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