Re: CNEr does not build
For what it's worth, R will not create a configure file from
configure.ac on package install, so the presence of configure.ac seems
to be a red herring -- there is no point in patching configure.ac or to
search for src/Makevars.in, since neither of these are used.
For me
R CMD build CNEr && R CMD INSTALL CNEr*gz
compiles and installs 'as expected'.
Of course one wonders why configure.ac is present if not used, or vv for
configure, src/Makevars.in
Martin
On 05/28/2018 07:36 AM, Andreas Tille wrote:
[Sending from a different e-mail account since my normal mail seems to
be refused by live.com <http://live.com>]
Hi,
I'm trying to package CNEr for Debian. After it was clarified that the
code copy of ucsc can be used license wise I have the following
technical issues:
1. The configure script does not work. I had to apply a patch[1] to get
it working at all.
2. src/Makevars.in is missing in the download tarball - I created an
empty
one manually (may be that's the reason for issue 4.)
3. There are syntactical errors in the C code which I patched [2]
4. The make process does not touch the ucsc subdir thus the library
is not build.
I gave up here since I assume that I'm probably missing something
important. Any idea how to get the package properly build?
Kind regards
Andreas.
[1]
https://salsa.debian.org/r-pkg-team/r-bioc-cner/blob/master/debian/patches/fix_configure.patch
[2]
https://salsa.debian.org/r-pkg-team/r-bioc-cner/blob/master/debian/patches/fix_syntax.patch
--
http://fam-tille.de
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