Re: Enabling Python bindings for jellyfish
I think the respective maintainers should talk and then discuss with their
upstreams as the collision potential isn't just in Debian.
Scott K
On Tuesday, December 29, 2015 12:27:37 PM Paul Tagliamonte wrote:
> Just FYI - there's a Python module called Jellyfish about to be uploaded;
> can we resolve the name collision early?
>
> https://pypi.python.org/pypi/jellyfish
>
> Paul
>
> On Tue, Dec 29, 2015 at 12:06 PM, Scott Kitterman <debian@kitterman.com>
>
> wrote:
> > On Tuesday, December 29, 2015 11:52:07 AM Scott Kitterman wrote:
> > > On Tuesday, December 29, 2015 12:30:14 AM Andreas Tille wrote:
> > > > Hi,
> > > >
> > > > I realised that for jellyfish[1] Python bindings can be activated. I
> > > > tried to do so and configuring and building works fine - but I have no
> > > > idea how to sensibly install the files into the python-jellyfish
> > > > package. Any idea how to call swig/python/setup.py or do something
> >
> > else
> >
> > > > to install the files into the right location.
> > > >
> > > > Any help?
> > > >
> > > > Kind regards
> > > >
> > > > Andreas.
> > > >
> > > > [1] git://anonscm.debian.org/debian-med/jellyfish.git
> > >
> > > I haven't been able to actually test this since when I try to build it,
> > > I
> > > get this error:
> > >
> > > jellyfish_wrap.cxx:3104:33: fatal error: jellyfish/mer_dna.hpp: No such
> >
> > file
> >
> > > or directory
> > >
> > > I think it should ~work. Note that these bindings are for python3, not
> > > python. I've adjusted things accordingly. The configure changes I made
> >
> > (so
> >
> > > that configure wouldn't fail) mean perl bindings don't get built
> >
> > either. I
> >
> > > didn't check if that was working before.
> > >
> > > Scott K
> >
> > Correction: It's not in the diff, but I had to remove the auto-configure
> > override to get through configure.
> >
> > Scott K
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