Re: Enabling Python bindings for jellyfish

[Paul Tagliamonte <paultag@ubuntu.com>]

Just FYI - there's a Python module called Jellyfish about to be uploaded; can we resolve the name collision early?

https://pypi.python.org/pypi/jellyfish

Paul

On Tue, Dec 29, 2015 at 12:06 PM, Scott Kitterman <debian@kitterman.com> wrote:

On Tuesday, December 29, 2015 11:52:07 AM Scott Kitterman wrote:
> On Tuesday, December 29, 2015 12:30:14 AM Andreas Tille wrote:
> > Hi,
> >
> > I realised that for jellyfish[1] Python bindings can be activated.  I
> > tried to do so and configuring and building works fine - but I have no
> > idea how to sensibly install the files into the python-jellyfish
> > package.  Any idea how to call swig/python/setup.py or do something else
> > to install the files into the right location.
> >
> > Any help?
> >
> > Kind regards
> >
> >         Andreas.
> >
> > [1] git://anonscm.debian.org/debian-med/jellyfish.git
>
> I haven't been able to actually test this since when I try to build it, I
> get this error:
>
> jellyfish_wrap.cxx:3104:33: fatal error: jellyfish/mer_dna.hpp: No such file
> or directory
>
> I think it should ~work.  Note that these bindings are for python3, not
> python.  I've adjusted things accordingly.  The configure changes I made (so
> that configure wouldn't fail) mean perl bindings don't get built either.  I
> didn't check if that was working before.
>
> Scott K

Correction: It's not in the diff, but I had to remove the auto-configure
override to get through configure.

Scott K

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