Hi Bilal,
thanks a lot for all your work! I would be very happy if you would stay
in the team and contribute as long as your time permits.
Kind regards
Andreas.
Am Wed, Sep 14, 2022 at 08:31:23PM +0530 schrieb Mohd Bilal:
Hello team \o/ ,
I'm Mohammed Bilal and I've been the GSoC intern working with the Debian Med
Team during 2022 and the one who've been bugging this mailing list for the
past few months.This is my final report for the GSoC project "Quality
Assurance and Continuous Integration for Applications in Life Sciences and
Medicine". This is an overview of the work done during my GSoC period with
the team.
** About the project
The Debian Med project has packaged several applications in life sciences
and medicine. Continuous integration for these packages is essential to
ensure reproducible results and that all components work together. These,
tests often uncover bugs in the code and the packaging process that can
cause failures on end-user machines. The aim of my project was to write
autopkgtests for Debian Med packages, fix existing tests, any pipeline
failures and fix the bugs uncovered by these tests.
** Statistics:
Autopkgtests added: 30
Updates : 7
Bugs fixed: 5
Autopkgtests added:
*python-datacache
*parallel-fastq-dump
*nifticlib
*gifticlib
*dicomnifti
*openslide
*minc-tools
*dcm2niix
*atropos
*python-bioblend
*python-cobra
*intake
*bmtk
*nifti2dicom
*biomaj3-cli
*gdcm
*megadepth
*rockhopper
*emmax
*zalign
*plastimatch
*delly
*dcmtk
*nipype
*emperor
*python-wdlparse
*libbigwig
*libncl
*gatb-core
*tvc
Package Updates:
*q2-dada2
*q2-feature-classifier
*q2-fragment-insertion
*q2-metadata
*q2-phylogeny
*delly
*q2-sample-classifier
RC Bugs fixed
*dcm2niix (Closes: #1012336)
*dicomnifti (Closes: #1013364)
*gdcm (Closes: #1016450)
*mothur (Closes: #1014104)
*megadepth (Closes: #1016454)
I became a Debian Maintainer right before the start of my gsoc journey and
I'm thankful to my mentors for giving me access to upload some of my work on
my own. Also during gsoc I got the chance to use some of the Debain
Project's Infra like I got access to a s390 porterbox for fixing a bug in
one of the packages I've worked on
I would like to thank my mentors, Andreas Tille and Nilesh Patra for their
constant support and encouragement. I had a wonderful experience working
with these amazing DDs. They were very quick to respond to my queries,
sponsoring uploads and were very supportive. Also I would like to thank
other Debian-Med members on this mailing list and the matrix room who guided
me during my GSoC period. You all were super supportive and provided much
needed feedback for my work. I plan to stick around and continue my
contributions to Debian Med in the near feature.
A snippet containing the links of all packages I've worked can be found
here[1]
Finally thanking the Debian Project for giving me this opportunity.I had a
fun and productive summer with Debian 😃
[1] - https://salsa.debian.org/-/snippets/609
Thanks
--
Mohammed Bilal
2D65 BC1E B966 5A6E 97F9 730A B3F5 9452 8521 9E1F