Hi Andreas,
Well, there was no answer from ITK Uploaders here, but I filled a bug as you recommended.
I also added a patch to temporarily disable the guilty filter and fix the link stage, this builds fine on my side.
Please confirm this is ok for you.
Thanks as always for your time. :)
| Dr. Flavien BRIDAULT Director of Software Development IRCAD France & IRCAD Africa flavien.bridault@ircad.fr Tél. : +33 (0)3 88 119 201 |
 http://www.ircad.fr/ http://www.ircad.africa/ Suivez l'IRCAD sur  |
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| IRCAD France Hôpitaux Universitaires - 1, place de l'Hôpital - 67091 Strasbourg Cedex - FRANCE |
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Hi Flavien, Am Fri, Jan 21, 2022 at 10:16:19AM +0100 schrieb Flavien Bridault:Well, sorry I assumed this module was not built for a reason... It is actually an experimental module for algorithms, that may be promoted in a real category if they are judged good enough. See https://itk.org/Doxygen/html/group__ITKReview.html.I intentionally have set ITK Uploaders in CC. ;-)So I have no idea if Debian wants to enable this module considering this.There is no "declared will of Debian". May be the best idea is you file a wishlist bug report so it is documented and adapt sight as long as this feature is missing.Otherwise, I can give a try to try to build it and propose a patch, but I admit I was a bit afraid by the importance of the package. :)If you add that patch to the wishlist bug report its chances are way higher to get fixed.I would prefer to hear the advice of someone maintaining this package before proposing any modification, is there anyone on this list that could help?I'm personally lacking the knowledge to give more sensible comments. Kind regards Andreas.*Dr. Flavien BRIDAULT* Director of Software Development IRCAD France & IRCAD Africa flavien.bridault@ircad.fr <mailto:flavien.bridault-louchez@ircad.fr> Tél. : +33 (0)3 88 119 201 IRCAD France http://www.ircad.fr/ http://www.ircad.africa/ <http://www.ircad.fr/> Suivez l'IRCAD sur Facebook <http://www.facebook.com/pages/IRCAD/193785273990141> *IRCAD France* Hôpitaux Universitaires - 1, place de l'Hôpital - 67091 Strasbourg Cedex - FRANCE Le 20/01/2022 à 21:00, Andreas Tille a écrit :Hi Flavien, Am Thu, Jan 20, 2022 at 04:33:28PM +0100 schrieb Flavien Bridault:I have understood the problem. The missing image filter has moved in an optional module, ITKReview. Two possible solutions: 1. modify the ITK package in order to enable the build of the ITKReview moduleI'm not sure whether I understand this correctly. We probably want a feature complete package. If not our users might be surprised about missing features in other applications as well.2. remove the filter from sight build - this is what we did on Windows and why it builds with ITK5.... ^^Finally its your decision.This image filter is really non-essential, so I guess it is easier to take solution 2, can you confirm please ?Its perfectly fine whatever you decide. Kind regards Andreas.Hi Andreas, I am a bit disappointed it doesn't build because we do use ITK5 on Windows. Anyway, I'll take care of this of course, thanks for trying. :) Cheers, *Dr. Flavien BRIDAULT* Director of Software Development IRCAD France & IRCAD Africa flavien.bridault@ircad.fr <mailto:flavien.bridault-louchez@ircad.fr> Tél. : +33 (0)3 88 119 201 IRCAD France http://www.ircad.fr/ http://www.ircad.africa/ <http://www.ircad.fr/> Suivez l'IRCAD sur Facebook <http://www.facebook.com/pages/IRCAD/193785273990141> *IRCAD France* Hôpitaux Universitaires - 1, place de l'Hôpital - 67091 Strasbourg Cedex - FRANCE Le 12/01/2022 à 15:17, Andreas Tille a écrit :Hi Flavien, as you can see below ITK4 is buggy and we switched to ITK5 anyway so ITK4 will be removed. To verify whether sight might build with ITK5 smoothly I simply replaced libinsighttoolkit4-dev by libinsighttoolkit5-dev in (Build-)Depends[1], but obviously: ... [ 81%] Building CXX object libs/io/dicom/test/CMakeFiles/io_dicomTest.dir/tu/DicomAnonymizerTest.cpp.o cd /build/sight-21.0.0/obj-x86_64-linux-gnu/libs/io/dicom/test && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_LOG_DYN_LINK -DBOOST_LOG_SETUP_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SPIRIT_USE_PHOENIX_V3 -DBOOST_THREAD_DONT_PROVIDE_DEPRECATED_FEATURES_SINCE_V3_0_0 -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_PROVIDES_FUTURE -DBOOST_THREAD_VERSION=2 -DIO_DICOMTEST_EXPORTS -I/build/sight-21.0.0/obj-x86_64-linux-gnu/libs/core/pch/pchCore/include/pchCore -I/build/sight-21.0.0/obj-x86_64-linux-gnu/libs/io/dicom/include -I/build/sight-21.0.0/libs -I/build/sight-21.0.0/libs/core -I/build/sight-21.0.0/obj-x86_64-linux-gnu/libs/io/base/include -I/build/sight-21.0.0/obj-x86_64-linux-gnu/libs/core/core/include -I/usr/include/libxml2 -I/build/sight-21.0.0/obj-x86_64-linux-gnu/libs/core/data/include -I/build/sight-21.0.0/obj-x86_64-linux-gnu/libs/core/service/include -I/build/sight-21.0.0/obj-x86_64-linux-gnu/libs/core/activity/include -I/build/sight-21.0.0/obj-x86_64-linux-gnu/libs/filter/dicom/include -I/build/sight-21.0.0/obj-x86_64-linux-gnu/libs/geometry/data/include -I/build/sight-21.0.0/obj-x86_64-linux-gnu/libs/io/zip/include -I/build/sight-21.0.0/obj-x86_64-linux-gnu/libs/core/utestData/include -I/build/sight-21.0.0/obj-x86_64-linux-gnu/libs/core/utest/include -isystem /usr/include/gdcm-3.0 -isystem /usr/lib -isystem /usr/include/cppunit -g -O2 -ffile-prefix-map=/build/sight-21.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -fvisibility=hidden -fvisibility-inlines-hidden -march=sandybridge -mtune=generic -mfpmath=sse -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wconversion -Wno-unused-parameter -Wno-ignored-qualifiers -fPIC -std=gnu++17 -include "pch.hpp" -Winvalid-pch -MD -MT libs/io/dicom/test/CMakeFiles/io_dicomTest.dir/tu/DicomAnonymizerTest.cpp.o -MF CMakeFiles/io_dicomTest.dir/tu/DicomAnonymizerTest.cpp.o.d -o CMakeFiles/io_dicomTest.dir/tu/DicomAnonymizerTest.cpp.o -c /build/sight-21.0.0/libs/io/dicom/test/tu/DicomAnonymizerTest.cpp /build/sight-21.0.0/libs/filter/image/SpheroidExtraction.cpp:34:10: fatal error: itkLabelGeometryImageFilter.h: No such file or directory 34 | #include <itkLabelGeometryImageFilter.h> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ compilation terminated. ... the situation is more complex. Would you mind switching the upstream code to ITK5? Kind regards Andreas. [1]https://salsa.debian.org/med-team/sight/-/commit/4dfa098d04116ef8c0320e6786e50337d0059ce7 ----- Weitergeleitete Nachricht von Debian testing autoremoval watch<noreply@release.debian.org> ----- Date: Wed, 12 Jan 2022 04:39:32 +0000 From: Debian testing autoremoval watch<noreply@release.debian.org> To:sight@packages.debian.org Subject: sight is marked for autoremoval from testing sight 21.0.0-3 is marked for autoremoval from testing on 2022-02-09 It (build-)depends on packages with these RC bugs: 984284: insighttoolkit4: otb: ftbfs with GCC-11 https://bugs.debian.org/984284 This mail is generated by: https://salsa.debian.org/release-team/release-tools/-/blob/master/mailer/mail_autoremovals.pl Autoremoval data is generated by: https://salsa.debian.org/qa/udd/-/blob/master/udd/testing_autoremovals_gatherer.pl _______________________________________________ Debian-med-packaging mailing list Debian-med-packaging@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-packaging ----- Ende weitergeleitete Nachricht -----
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