Bug#986141: marked as done (ITP: snpeff -- genetic variant annotation and effect prediction toolbox)
Your message dated Sat, 22 Jan 2022 17:00:10 +0000
with message-id <E1nBJkI-0003bY-33@fasolo.debian.org>
and subject line Bug#986141: fixed in snpeff 4.3t+dfsg1-1
has caused the Debian Bug report #986141,
regarding ITP: snpeff -- genetic variant annotation and effect prediction toolbox
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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986141: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=986141
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--- Begin Message ---
- To: Debian Bug Tracking System <submit@bugs.debian.org>
- Subject: ITP: snpeff -- genetic variant annotation and effect prediction toolbox
- From: Pierre Gruet <pgt@debian.org>
- Date: Tue, 30 Mar 2021 12:24:18 +0200
- Message-id: <161709985862.20333.8143571389417693521.reportbug@mendelssohn>
Package: wnpp
Severity: wishlist
Owner: Debian-med team <debian-med@lists.debian.org>
X-Debbugs-Cc: debian-devel@lists.debian.org, debian-med@lists.debian.org
* Package name : snpeff
Version : 4.3t
Upstream Author : Pablo Cingolani <pcingola@users.sourceforge.net>
* URL : https://pcingola.github.io/SnpEff/
* License : LGPL-3
Programming Lang: Java
Description : genetic variant annotation and effect prediction toolbox
SnpEff is a variant annotation and effect prediction tool. It annotates
and predicts the effects of variants on genes (such as amino acid
changes).
The inputs are predicted variants (SNPs, insertions, deletions and
MNPs). The input file is usually obtained as a result of a sequencing
experiment, and it is usually in variant call format (VCF).
SnpEff analyzes the input variants. It annotates the variants and
calculates the effects they produce on known genes (e.g. amino acid
changes).
This software is needed in many workflows in the Debian-med team. It will be
maintained inside the team.
--- End Message ---
--- Begin Message ---
Source: snpeff
Source-Version: 4.3t+dfsg1-1
Done: Pierre Gruet <pgt@debian.org>
We believe that the bug you reported is fixed in the latest version of
snpeff, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 986141@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Pierre Gruet <pgt@debian.org> (supplier of updated snpeff package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sat, 22 Jan 2022 14:41:57 +0100
Source: snpeff
Binary: libsnpeff-java libsnpeff-java-doc snpeff
Architecture: source all
Version: 4.3t+dfsg1-1
Distribution: experimental
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Pierre Gruet <pgt@debian.org>
Description:
libsnpeff-java - genetic variant annotation and effect prediction toolbox - lib
libsnpeff-java-doc - Documentation for Snp Effect
snpeff - genetic variant annotation and effect prediction toolbox - tool
Closes: 986141
Changes:
snpeff (4.3t+dfsg1-1) experimental; urgency=medium
.
* Initial release (Closes: #986141)
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