New version of muscle with changed options compared to previous versions [muscle_5.1-1_source.changes ACCEPTED into unstable]
Hi,
I've just realised there is a new version of muscle (now on Github)
which has not only a changed algorithm but also changed command line
options (I had to adapt autopkgtest which is also a bit weak - some
educated person should check the result and drop a proper md5sum for
the expected result).
I think we should follow upstream development but given that this quite
wide spread tool is used in several other packages (like biopython or
bioperl) I expect failing tests of those in the near future. This opens
the question whether we should possibly maintain a muscle3 package - but
than we also need to patch those tools to spot the changed name of the
binary.
Any opinions of real users of this package are welcome.
Kind regards
Andreas.
PS: Charles, I kept all Uploaders of this package in CC. You remain
Uploader in lots of other packages and I personally do not see
any reason to change this. I'd be super happy if you could come
back since we really need all competent hands. However, if you
do not see a real chance that this will happen in the foreseable
future it might make sense to reflect this in the list of Uploaders.
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Mon, 17 Jan 2022 15:13:06 +0100
Source: muscle
Architecture: source
Version: 1:5.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Changes:
muscle (1:5.1-1) unstable; urgency=medium
.
* Muscle moved to Github and issued a rewritten release
* New upstream version
* Standards-Version: 4.6.0 (routine-update)
* debhelper-compat 13 (routine-update)
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* Use secure URI in Homepage field.
* Add missing build dependency on dh addon.
* Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
Repository-Browse.
* Fix day-of-week for changelog entry 3.52-1.
* d/copyright: Fix source location
* d/rules: New source directory
* Do not provide outdated documentation
* No static linking
* New help2man based manpage
* Add NEWS to inform users about changed command line options
* Make long description more verbose about new version
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Thank you for your contribution to Debian.
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