https://github.com/broadinstitute/viral-ngs/blob/master/requirements-conda.txt lists dependencies for https://viral-ngs.readthedocs.io/en/latest/ that I have just transferred into a column on the "Virus" tab of that spreadsheet https://docs.google.com/spreadsheets/d/1tApLhVqxRZ2VOuMH_aPUgFENQJfbLlB_PFH_Ah_q7hM/edit#gid=543782716 We have most of it. But not all. The documentation may also help our discussions. Best, Steffen