On 10/15/21 11:33 AM, Nilesh Patra wrote: Update:
===> pyvcf
Fixed and uploaded. This problem was due to new setuptools.
===> cnvkit
This looked like a flaky failure, and probably it was due to tests running in parallel. I uploaded with what I considered sensible I have re-confirmed that they build fine with new pysam, and these failures never had anything to do with new pysam.
So I will stem ahead and upload pysam to unstable in a while, after doing a few more tests
I rebuilt seqcluster and bcbio both, and they have no problems building with new pysam. Since pretty much everything looked good, I uploaded pysam to unstable. Nilesh
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