Re: Bug#986141: ITP: snpeff -- genetic variant annotation and effect prediction toolbox
Am 30.03.21 um 15:25 schrieb Andreas Tille:
> Hi Pierre,
> On Tue, Mar 30, 2021 at 01:16:17PM +0200, Pierre Gruet wrote:
>> Yes! It is almost ready and I'm happy about this :)
> That's understandable considering the lot of work.
Thank you for this. Well done, indeed.
>> While we are at it: I had to package SnpEff separately from its companion
>> SnpSift, as their source trees are now completely separated.
>> Do you (or someone else) know if SnpSift would be important to package?
>> Looking at the spreadsheet I am not sure it is worth packaging right now.
> I have seen it mentioned from time to time but I'm not sure whether it
> was just in connection with SnpEff. Tony and Steffen (both in CC) might
> give some more informed answer to your question.
The bcbio devs answered this here
where they look forward to exclusively use vcfanno to filter the variants.
Maybe a pointer to https://tracker.debian.org/pkg/vcfanno should be added
as a suggestion to snpeff?
Many thanks again!
Steffen (who should now have another look at bcbio again)