Re: Bug#986141: ITP: snpeff -- genetic variant annotation and effect prediction toolbox

[Andreas Tille <andreas@an3as.eu>]

Hi Pierre,

very nice.  Seems you had some progress with this long term
goal!

Thanks a lot

     Andreas.

On Tue, Mar 30, 2021 at 12:24:18PM +0200, Pierre Gruet wrote:
> Package: wnpp
> Severity: wishlist
> Owner: Debian-med team <debian-med@lists.debian.org>
> X-Debbugs-Cc: debian-devel@lists.debian.org, debian-med@lists.debian.org
> 
> * Package name    : snpeff
>   Version         : 4.3t
>   Upstream Author : Pablo Cingolani <pcingola@users.sourceforge.net>
> * URL             : https://pcingola.github.io/SnpEff/
> * License         : LGPL-3
>   Programming Lang: Java
>   Description     : genetic variant annotation and effect prediction toolbox
> 
> SnpEff is a variant annotation and effect prediction tool. It annotates
> and predicts the effects of variants on genes (such as amino acid
> changes).
> 
> The inputs are predicted variants (SNPs, insertions, deletions and
> MNPs). The input file is usually obtained as a result of a sequencing
> experiment, and it is usually in variant call format (VCF).
> 
> SnpEff analyzes the input variants. It annotates the variants and
> calculates the effects they produce on known genes (e.g. amino acid
> changes).
> 
> 
> This software is needed in many workflows in the Debian-med team. It will be
> maintained inside the team.
> 
> 

-- 
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