Re: Should we offer Debian Med workflow-containers?
Hi Steffen,
On 1/17/21 4:42 PM, Steffen Möller wrote:
Hello,
Our HPC environment does not offer Docker, but Singularity
(https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0177459)
is supported. I thought I should give it a shot. Is anybody using this
already on this list?
Best,
Steffen
We use the singularity containers. Docker is a no go due to it's
insecure design and I also refrain from using Docker images, since I
don't know how they were built.
But we have a great success with singularity definition files.
I normally would use Debian as the base system and build the image with
the software(s) I need in order to run the image later on HPC.
Nextflow and snakemake also support singularity out of box AFAIK.
Best regards,
Alex
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