Re: Should we offer Debian Med workflow-containers?
On Sun, 17 Jan 2021, Steffen Möller wrote:
> Our HPC environment does not offer Docker, but Singularity
> is supported. I thought I should give it a shot. Is anybody using this
> already on this list?
FWIW, we have been early adopters and promoters of singularity (largely
within neuroimaging field), using it "daily".
- using https://singularity-hub.org/ as a public builder/archive for
- keeping all images under VCS using datalad (git-annex), with help of
- to facilitate archival, and reproducible execution (only recently
singularity came up with -e) established
https://github.com/ReproNim/containers/ which is a collection of
singularity images for neuroimaging + a helper
to ensure absent leakage of the outside env inside the containerized
(without using -e) + where possible/needed (OSX) execute it via docker
(there are some gotchas to resolve with some containers but generally
May be would be of some help/information
Yaroslav O. Halchenko
Center for Open Neuroscience http://centerforopenneuroscience.org
Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755