metaphlan2-data

[Tony Travis <tony.travis@minke-informatics.co.uk>]

Hi,

During routine checking, I noticed that a file is missing from 
"metaphlan2-data" in "med-bio":

> debsums -ac metaphlan2-data
> debsums: missing file /var/lib/metaphlan2-data/markers.fasta (from metaphlan2-data package)

The file is present in the metaphlan2-data.deb:

> apt download metaphlan2-data
> dpkg-deb -Rv metaphlan2-data_2.6.0+ds-3_all.deb metaphlan2-data_2.6.0+ds-3_all
> ./
> ./usr/
> ./usr/sbin/
> ./usr/sbin/metaphlan2-data-convert
> ./usr/share/
> ./usr/share/doc/
> ./usr/share/doc/metaphlan2-data/
> ./usr/share/doc/metaphlan2-data/changelog.Debian.gz
> ./usr/share/doc/metaphlan2-data/copyright
> ./usr/share/man/
> ./usr/share/man/man8/
> ./usr/share/man/man8/metaphlan2-data-convert.8.gz
> ./var/
> ./var/lib/
> ./var/lib/metaphlan2-data/
> ./var/lib/metaphlan2-data/bt2.md5
> ./var/lib/metaphlan2-data/markers.fasta
> ls -l metaphlan2-data_2.6.0+ds-3_all/var/lib/metaphlan2-data/markers.fasta
> -rw-r--r-- 1 root root 771154614 Sep  6  2016 metaphlan2-data_2.6.0+ds-3_all/var/lib/metaphlan2-data/markers.fasta

The manifest has an entry for "markers.fasta", which is why debsums 
reports it as a missing file:

> fgrep markers.fasta metaphlan2-data_2.6.0+ds-3_all/DEBIAN/md5sums
> 3f824117b27a052ede59c68c2f1dead4  var/lib/metaphlan2-data/markers.fasta

However, "markers.fasta" is not installed.

I copied the file into place manually because I can't work out why it 
isn't installed with the rest of the package?

Any ideas/explanations about why would be apreciated :-)

Thanks,

  Tony.

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