Re: Debian Med Covid special?
I am bussy making a list, but I want to let know this.
Fastqc is on the debian med package list
(https://tracker.debian.org/pkg/fastqc)
There are more, all seem gpl3 and later:
https://www.bioinformatics.babraham.ac.uk/projects/index.html
On 23-03-20 15:37, Andreas Tille wrote:
> [Please do not communicate in private - I've CCed Debian Med list]
>
> Hi Ben,
>
> On Mon, Mar 23, 2020 at 02:20:39PM +0100, Ben Tris wrote:
>>> We URGENTLY NEED more input about what packages are really relevant for
>>> COVID-19 and what not!
>> Do you mean input from the teams packages or other?
> Both.
>
>> I can make a list with your teams packages that have recent uploaded
>> updates not yet applied.
>>
>> I can also find out which packages are recently updated from the
>> packages tracker info.
>>
>> That might give some clue.
> Someone should browse the list of packages
>
> https://blends.debian.org/med/tasks/bio
> https://blends.debian.org/med/tasks/bio-dev
> https://blends.debian.org/med/tasks/epi
> ???
>
> which one are helpful for COVID-19 and we should add these to
>
> https://salsa.debian.org/blends-team/med/-/blob/master/tasks/covid-19
>
> My first shot was just
>
> cwltool, snakemake
>
> but we have more. That's the time for experts in virology and
> epidemiology to do a sensible categorisation. You can also browse the
> internet and add comments there as I did today. Than we take over and
> start packaging. At the time of writing I've uploaded augur and pinged
> ftpmaster on IRC for chances of fast processing.
>
>> If you want me to contact the sources, or other, let me know.
>>
>> Packages links do not directly go to the new tracker on this link:
>> https://blends.debian.org/med/bugs/covid-19.html
> Unfortunately I have a day job which is currently also very demanding
> and I can not work with full effort on Debian Med. If you think
> something is missing on
>
> https://blends.debian.org/med/
>
> Here is the source code:
>
> https://salsa.debian.org/blends-team/website/-/blob/master/www/med/index.html
>
> Pushing this will update the page. Adding links to relevant pages would
> be really helpful.
>
> Kind regards
>
> Andreas.
>
>> On 23-03-20 13:28, Andreas Tille wrote:
>>> Hi Ben,
>>>
>>> On Mon, Mar 23, 2020 at 10:24:15AM +0100, Ben Tris wrote:
>>>> Is it possible for you to make a covid special on your main site with
>>>> covid related packages?
>>> We are working on this:
>>>
>>> https://blends.debian.org/med/tasks/covid-19
>>>
>>> Bugs in these packages are assembled here:
>>>
>>> https://blends.debian.org/med/bugs/covid-19.html
>>>
>>> We URGENTLY NEED more input about what packages are really relevant for
>>> COVID-19 and what not!
>>>
>>>> Maybe even on the Debian main site.
>>>>
>>>> Something like:
>>>>
>>>> How is Debian helping: Covid disease.
>>>>
>>>> How all of us benefit.
>>>>
>>>> How you can help.
>>> We are working on this.
>>>
>>> Thanks a lot for your hint in any case
>>>
>>> Andreas.
>>>
>>
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