Re: Status of rsat?

[Andreas Tille <andreas@an3as.eu>]

Hi Jacques,

On Thu, Nov 21, 2019 at 05:13:15PM +0100, Jacques van Helden wrote:
> https://github.com/RSAT-doc/installing-RSAT <https://github.com/RSAT-doc/installing-RSAT>
> 
> Ubuntu procedure
> 	https://rsat-doc.github.io/installing-RSAT/installing_RSAT_procedure.html <https://rsat-doc.github.io/installing-RSAT/installing_RSAT_procedure.html>
> 
> 
> The bash file sin the installer folder contain the lists of dependencies. 

I had a **quick** look at the script

   bash_install_scripts/installer/02_python_packages.bash

which is doing:

sudo pip install numpy
sudo pip install scipy
sudo pip install matplotlib
sudo pip install suds
sudo pip install soappy
sudo pip install fisher
sudo pip install httplib2
## pip install pygraphviz ## OSError: Error locating graphviz.


With the exception of soappy (which is currently only available for
Python2 - see #938180) and fisher (which really needs to be packaged)
the first chunk of manually installed packages could be taken from the
Debian package pool.  Before I start to tackle things like fisher (or
help fixing bug #938180) could you explain your motivation why these are
installed via pip instead of apt?

Even python3-pygraphviz is available (and has no bug that would indicate
any loading problem).

Kind regards

      Andreas.

-- 
http://fam-tille.de