Re: htslib_1.9-1_amd64.changes ACCEPTED into experimental
;) Well spotted. Done.
I also tested pysam in its _very_ new version 1.5.0.1 which built
flawlessly against htslib 1.9. There are quite some additional
rdependencies, though:
$ apt-cache rdepends libhts2
Reverse Depends:
bio-eagle
samtools
trinityrnaseq
stacks
sambamba
rsem
rna-star
reapr
qtltools
python3-pysam
python-pysam
pbdagcon
pbbamtools
libpbbam
nanopolish
libvcflib-tools
libtabixpp0
freebayes
fastqtl
crac
blasr
bcftools
augustus
My plan was to rebuild pysam 1.5.0.1 with version 1.7 of htslib which
they officially (so the readme says) support and upload that to main.
Nanopolish also has a new upstream version, so I will test that against
1.9, too. Should that also pass tests then I tend to think we should
move htslib 1.9 from experimental to unstable. We should then possibly
block its transition to testing until all (most) its reverse
dependencies test successfully against it.
Best,
Steffen
On 7/29/18 1:13 AM, Andreas Tille wrote:
> Thanks. Please push your changes, Andreas. > > On Sat, Jul 28, 2018 at 06:49:14PM +0000, Debian FTP Masters wrote:
>> >> >> Accepted: >>
> Format: 1.8
> Date: Thu, 26 Jul 2018 18:54:12 +0200
> Source: htslib
> Binary: libhts2 libhts-dev libhts-private-dev htslib-test tabix
> Architecture: source all amd64
> Version: 1.9-1
> Distribution: experimental
> Urgency: medium
> Maintainer: Debian Med Packaging Team
> <debian-med-packaging@lists.alioth.debian.org>
> Changed-By: Steffen Moeller <moeller@debian.org>
> Description:
> htslib-test - Test data for HTSlib
> libhts-dev - development files for the HTSlib
> libhts-private-dev - private development files for the HTSlib (use
> with care)
> libhts2 - C library for high-throughput sequencing data formats
> tabix - generic indexer for TAB-delimited genome position files
> Changes:
> htslib (1.9-1) experimental; urgency=medium
> .
> * Team upload.
> .
> * New upstream version. Some symbols were added, others were removed:
> - cram_to_bam was removed
> - fai_build_core was removed
> * Updated symbols list
> * Introduced -flto
> Checksums-Sha1:
> b6836603611fa12f7f4f3d49f94ff7efd75be22e 2308 htslib_1.9-1.dsc
> 0bf3cb05883a38ea4da10711e833b007df723cc1 1285580 htslib_1.9.orig.tar.gz
> cac4c952709f984a1883cb46801164810b7966f3 13664 htslib_1.9-1.debian.tar.xz
> 0308c4a4b208732c16cf3fd2bfbc7b46e6657a5a 915596 htslib-test_1.9-1_all.deb
> aac61634077426e2e82ea26cddc3900feb27eaee 8287
> htslib_1.9-1_amd64.buildinfo
> b3a2526b8cd55f04f31355de9d50b7174661d2a1 4295748
> libhts-dev_1.9-1_amd64.deb
> bb8ca6d00fbd9e6626450da5f4bc2e78bfe8bc7a 41272
> libhts-private-dev_1.9-1_all.deb
> 394dad423f318720fe9d0f690178c2b0c920cd33 216280
> libhts2-dbgsym_1.9-1_amd64.deb
> a5c34245493dfcbb22a3be829fc1dec6cee758b2 305372 libhts2_1.9-1_amd64.deb
> dac0c156812eeb80928607ab157565ad84a91453 509288
> tabix-dbgsym_1.9-1_amd64.deb
> 39114cde924723c28521cd87b27065a92deed5cf 295764 tabix_1.9-1_amd64.deb
> Checksums-Sha256:
> 6a0bd8be0403549734bd3caec0ddeb656aa7ddf085d227417dafdb9ba3a9ed02 2308
> htslib_1.9-1.dsc
> d2e3cde77b8f874b37453c63390cd992901266336e9f70e871ef42402510467f
> 1285580 htslib_1.9.orig.tar.gz
> 1404fcd3edb1e2d3e45909e4a79a9442724c1d0c3186f77845181f5b36ba6b0c
> 13664 htslib_1.9-1.debian.tar.xz
> 1494fead8f0dd92200b44e79a558a841a68e21051c935cfb6079ecf313bd4549
> 915596 htslib-test_1.9-1_all.deb
> 8497faa7840b427f2797dc0210785c7a5afd8f11c12327fef32d7839d93e1941 8287
> htslib_1.9-1_amd64.buildinfo
> d1f2651d900d3f619f99f804144ba4bbde3833239086c0b81a709398539e0dc7
> 4295748 libhts-dev_1.9-1_amd64.deb
> d02f2a8f764cb2a3d2fed21faa88ff540258cc646c793a15e58830a9eefa0970
> 41272 libhts-private-dev_1.9-1_all.deb
> bd3df9e69b840cb9fb4321aa84c909a979b1fec8ac1fd90a48e6455bf497e4eb
> 216280 libhts2-dbgsym_1.9-1_amd64.deb
> 106afc805850075e2463ffb1d201accf1e775b4fa0c49073c672efaa0104a24f
> 305372 libhts2_1.9-1_amd64.deb
> b174f4844aaa65cf462176fea691950af8a3cb40774824c32f493c717a7d3a46
> 509288 tabix-dbgsym_1.9-1_amd64.deb
> 6475264cd40ca6e5495a983460ccf42c488e4e332eaa1bf2e86b10858408b9e0
> 295764 tabix_1.9-1_amd64.deb
> Files:
> afeb3aaae8e52b288834bdf5e13885b9 2308 science optional htslib_1.9-1.dsc
> deca473ddbf6227de3734fcf4e18f82f 1285580 science optional
> htslib_1.9.orig.tar.gz
> 39422ff3a617d1f86fec4fa7008c0b9c 13664 science optional
> htslib_1.9-1.debian.tar.xz
> e21552808286a07a9ab1a832557a0375 915596 science optional
> htslib-test_1.9-1_all.deb
> e852bcdc6f7424a1a8c31468e0c24043 8287 science optional
> htslib_1.9-1_amd64.buildinfo
> fe4750ebdb01aa1c53b65d795fb9619f 4295748 libdevel optional
> libhts-dev_1.9-1_amd64.deb
> 71447abc33630cf39fc7c40e458d2752 41272 libdevel optional
> libhts-private-dev_1.9-1_all.deb
> c3d685cf66bafdace6dd48bdc5488e29 216280 debug optional
> libhts2-dbgsym_1.9-1_amd64.deb
> aef13da00d69ba9f22a515de772979ef 305372 libs optional
> libhts2_1.9-1_amd64.deb
> afc2e9e6bc3160e58144d1b14b341ad3 509288 debug optional
> tabix-dbgsym_1.9-1_amd64.deb
> 9d1bda0d5f7b9fce2fffa33677371cb9 295764 science optional
> tabix_1.9-1_amd64.deb
>
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