Re: Delly is on salsa Re: bcbio is on salsa
Should we have a "dh_commonwl" tool, possibly?
This would possibly allow to prepare for some consistent post-processing
(indexing?) or other feats that we are not aware of, yet. Autogenerated
man pages come to mind. This sounds like something for our next Sprint.
Best,
Steffen
On 7/18/18 11:34 PM, Michael Crusoe wrote:
> CWL documents go in /use/share/commonwl/
>
> As
> per https://www.commonwl.org/v1.0/CommandLineTool.html#Discovering_CWL_documents_on_a_local_filesystem
>
> mie., 11 iul. 2018, 10:27 Andreas Tille <andreas@an3as.eu
> <mailto:andreas@an3as.eu>> a scris:
>
> On Tue, Jul 10, 2018 at 10:41:11PM +0200, Steffen Möller wrote:
> > Delly is on the TODO list for bcbio (next to a few other tools
> that may
> > be of interest to us). The packaging is lintian-clean and
> inspectable on
> > https://salsa.debian.org/med-team/delly. I would not mind a
> review and
> > if that individual can upload - please ;o)
>
> I've fixed
>
> I: delly source: quilt-patch-missing-description
> minimal_makefile.patch
>
> and uploaded.
>
> > Delly ships with a cwl description of itself. I found that
> remarkable.
> > Do we have a policy where to store these files? I forgot. Michael?
>
> Good question. May be this should be documented in some README.Debian
> of cwl package (or some better place?)
>
> > Also interesting is the Dockerfile it ships. Somehow we need to
> do a bit
> > more of marketing for all the -dev packages we offer also for
> biological
> > software.
>
> Feel free to do so. :-)
>
> Kind regards
>
> Andreas.
>
> --
> http://fam-tille.de
>
Reply to: