Re: htsjdk status
On 04/17/2018 03:58 PM, Andreas Tille wrote:
> Hi Olivier,
>
> thanks a lot for your work on this. I've uploaded to experimental since
> we also need to upgrade picard-tools. Once both are settled we should
> move to sid.
>
> On Tue, Apr 17, 2018 at 02:25:03PM +0200, Olivier Sallou wrote:
>> I have updated/fixed htsjdk in git with following:
>>
>>
>> * fix Java 9 support, but will work on Java9 only (should change
>> default-jdk to opensjdk-9 in d/control?)
> Ups, forgot this in my upload. I now pushed this
>
> --- a/debian/control
> +++ b/debian/control
> @@ -6,7 +6,7 @@ Uploaders: Charles Plessy <plessy@debian.org>,
> Andreas Tille <tille@debian.org>
> Section: science
> Priority: optional
> -Build-Depends: default-jdk (>= 2:1.8),
> +Build-Depends: default-jdk (>= 2:1.9),
> javahelper,
> gradle-debian-helper,
> maven-repo-helper,
>
>
> to Git - do you think that's sufficient to fullfil your requirement?
i think so
>
>> * fix javadoc generation
>>
>> * fix tests support, however they are still disabled due to a new bug
>> with testng (#895886)
> Can be activated again when uploading to sid.
>
>> Status in explained in d/changelog [TODO]
>>
>>
>> Don't know if you want to upload now in this status (sid, experimental?)
> As I said for several reasons experimental seems to be the right target
> distribution.
>
>> Tests are disabled, but I could run them locally with a local patch on
>> testng.
> Since you are probably observing the testng bug please remember to
> re-activate the tests before we upload to sid.
>
> Kind regards
>
> Andreas.
>
> PS: I'll work on pushing latest picard-tools to Git and will come up
> with issues here if I face some (which is usually the case).
>
--
Olivier Sallou
Univ Rennes, Inria, CNRS, IRISA
Irisa, Campus de Beaulieu
F-35042 RENNES - FRANCE
Tel: 02.99.84.71.95
gpg key id: 4096R/326D8438 (keyring.debian.org)
Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438
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