Re: htsjdk status
Hi Olivier,
thanks a lot for your work on this. I've uploaded to experimental since
we also need to upgrade picard-tools. Once both are settled we should
move to sid.
On Tue, Apr 17, 2018 at 02:25:03PM +0200, Olivier Sallou wrote:
> I have updated/fixed htsjdk in git with following:
>
>
> * fix Java 9 support, but will work on Java9 only (should change
> default-jdk to opensjdk-9 in d/control?)
Ups, forgot this in my upload. I now pushed this
--- a/debian/control
+++ b/debian/control
@@ -6,7 +6,7 @@ Uploaders: Charles Plessy <plessy@debian.org>,
Andreas Tille <tille@debian.org>
Section: science
Priority: optional
-Build-Depends: default-jdk (>= 2:1.8),
+Build-Depends: default-jdk (>= 2:1.9),
javahelper,
gradle-debian-helper,
maven-repo-helper,
to Git - do you think that's sufficient to fullfil your requirement?
> * fix javadoc generation
>
> * fix tests support, however they are still disabled due to a new bug
> with testng (#895886)
Can be activated again when uploading to sid.
> Status in explained in d/changelog [TODO]
>
>
> Don't know if you want to upload now in this status (sid, experimental?)
As I said for several reasons experimental seems to be the right target
distribution.
> Tests are disabled, but I could run them locally with a local patch on
> testng.
Since you are probably observing the testng bug please remember to
re-activate the tests before we upload to sid.
Kind regards
Andreas.
PS: I'll work on pushing latest picard-tools to Git and will come up
with issues here if I face some (which is usually the case).
--
http://fam-tille.de
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