Re: Please check implementation

[Matus Kalas <Matus.Kalas@uib.no>]

Hey,

This is super awesome to see Andreas & Steffen, you really made my day!

A few notes:

 * Would you please add a dot to Bio.Tools? Or Bio.tools, whichever you 
like more.

 * The coloured backgrounds don't work in Firefox, but that's no problem 
at all.

 * I really like the coloured backgrounds otherwise (yeah!), but even 
more transparency would look much better to me.

 * The texts "Registry entries:" | "Biotools" | "RRID" | "OMICtools" are 
in italics in some browsers and regular in others. To me, the "Registry 
entries:" looks better in italics (to distinguish from the rest), and 
the registry links look much better in regular (especially when with the 
coloured backgrounds because those are rectangular).

 * RRID|SciCrunch: identifiers.org don't guarantee anything. If there's 
no cool permanent URL, identifiers.org don't have it either. That's 
exactly the case here. Unless they really have some temporary 
server-side problems exactly now. DuckDuckGo doesn't help either. 
(Unlike with OMICtools, there it works awesomely!!) The only usable link 
I found for RRID|SciCrunch is 
https://scicrunch.org/scicrunch/data/source/nlx_144509-1/search?q=SCR_010709 
i.e. prefix 
"https://scicrunch.org/scicrunch/data/source/nlx_144509-1/search?q=";. 
Unfortunately I haven't found a way to get the first hit directly. And 
the RRID link is dead just like the identifiers.org link. And sorry for 
a dumb question, are there any non-SciCrunch RRIDs, or should they all 
have a record in the SciCrunch registry?

What do you think?

Thanks^6!
Matus


On 2017-10-19 13:33, Andreas Tille wrote:
> Hi,
>
> I've posted a set of questions today to this list and they are 
> remaining
> **open**.  So those who feel able to answer the questions please check
> out this thread.
>
> Despite the open questions I tried an example implementation:
>
>    https://blends.debian.org/med/tasks/bio
>
> To mark different repositories visibly I went to their homepage and
> picked the "main color" there to use it as background for the according
> link (but used transparency level 75% to make the page not to
> varicoloured.
>
> I did **not** implemented the 'NA' feature suggested by Steffen since I
> was not convinced that users will really follow any link to do 
> something
> - my experience to provide screenshots, debtags and translations is
> quite bad (BTW, have you provided any screenshot today?)
>
> Please test, comment and find bugs in the implementation - and answer
> the open questions in this thread.
>
> Kind regards
>
>        Andreas.
>
> On Mon, Oct 09, 2017 at 04:10:59PM +0200, Steffen Möller wrote:
> > Hi Andreas,
> > here some R/Python/PHP-mix pseudocode idea for getting
> > the registry links displayed on the task page:
> >
> > registry_prefix={
> >   "bio.tools"=>"https://bio.tools/";,
> >   "RRID" => "http://identifiers.org/rrid/RRID:";,
> >   "SciCrunch" => "http://identifiers.org/rrid/RRID:";,
> >   "OMICtools" => "https://duckduckgo.com/?q=\\"; (a single backslash at 
> > the end is what I want)
> > }
> >
> > print "Registries: "
> > for (registry_name,registry_id) %in% registry_assignments {
> >   prefix=registry_prefix[[registry_name]]
> >   if (empty(prefix) or "NA"==registry_id) {
> >     print "%s:%s" % ($registry_name,$registry_id)
> >   } else {
> >     print "%s:<a href="%s%s">%s</a>" % 
> > (registry_name,prefix,registry_id,registry_id)
> >   }
> > }
> >
> > The situation with OMICtools is not yet ideal, but from what
> > I understood this will soon get better. The single backslash
> > at the end induces some "You feel lucky!"-like immediate
> > forward to the top hit. Funnily enough, SciCrunch also needs
> > a bit of bridge, albeit a more deterministic one.
> >
> > Best,
> >
> > Steffen
>
> --
> http://fam-tille.de