Re: Help for next version of freebayes needed: libseqlib build error
On Fri, Jan 27, 2017 at 02:51:27PM +0000, Ghislain Vaillant wrote:
>
> Looks like the system BWA and FML have conflicting bseq1_t
> declaration.
>
> I noticed that upstream is using personal forks of BWA and FML, not the
> upstream ones. If you look for bseq1_t in the SeqLib clones of BWA and
> FML, no definition appears. However, they do appear in the respective
> upstream repositories.
>
> Looks like upstream had to patch the BWA and FML code bases to be able
> to mix them without a multiple-definition error. I am not sure you can
> get away from it.
Upstream was very responsive[1] and seems to be willing to solve the
issue. Is there any suggestion whom to contact first BWA or FML?
Kind regards
Andreas.
[1] https://github.com/walaj/SeqLib/issues/13
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