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Re: Help for next version of freebayes needed: libseqlib build error

On Fri, 2017-01-27 at 16:10 +0100, Andreas Tille wrote:
> On Fri, Jan 27, 2017 at 02:51:27PM +0000, Ghislain Vaillant wrote:
> > 
> > Looks like the system BWA and FML have conflicting bseq1_t
> > declaration. 
> > 
> > I noticed that upstream is using personal forks of BWA and FML, not the
> > upstream ones. If you look for bseq1_t in the SeqLib clones of BWA and
> > FML, no definition appears. However, they do appear in the respective
> > upstream repositories.
> > 
> > Looks like upstream had to patch the BWA and FML code bases to be able
> > to mix them without a multiple-definition error. I am not sure you can
> > get away from it.
> Thanks for the quick response.

You're welcome.

>   I've opened
>    https://github.com/walaj/SeqLib/issues/13
> May be I might also address BWA and FML upstream - lets wait for a
> response first.

Both APIs are incompatible, so they should be made aware of it
regardless of what happens in SeqLib.


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