Re: Galaxy project producing their own Debian packages
Hello again,
https://anonscm.debian.org/cgit/python-modules/wchartype.git
has a similar problem for me. The version 3 packages are not placed in
their debian directories.
Many thanks
Steffen
On 29/06/16 19:16, Steffen Möller wrote:
> Hello,
>
>
> On 28/06/16 16:34, Olivier Sallou wrote:
>> by the way, as they are all python packages, should we handle them in
>> DebianMed or Python team ?
> I just put the first in
> http://anonscm.debian.org/git/python-modules/packages/svgwrite.git/
> since it is basically completely unmedical. I have some issues with it,
> i.e. there is no python3 module and the examples do not install.
>
> Someone please have a look and direct me a bit.
>
> Cheers,
>
> Steffen
>
>> On 06/28/2016 03:20 PM, Steffen Möller wrote:
>>> This is great! That custom fokr of pysam reads as if one wants to avoid
>>> that and rather give those extra features back to everyone via upstream.
>>>
>>> I'll do bioblend and svgwrite - now.
>>>
>>> Anybody else chiming in?
>>>
>>>
>>> bx-python
>>> wchartype Steffen - initial packaging in pzthon-modules git repoitory
>>> dictobj
>>> bioblend Steffen - failed..
>>> requests-toolbelt
>>> pulsar-galaxy-lib
>>> sqlalchemy-migrate
>>> svgwrite Steffen - initial packaging in python-modules git repository
>>>
>>>
>>> Steffen
>>>
>>>
>>> On 27/06/16 21:04, Michael Crusoe wrote:
>>>> Python packages that need packaging:
>>>>
>>>> bx-python
>>>> wchartype
>>>> dictobj
>>>> bioblend
>>>> requests-toolbelt
>>>> pulsar-galaxy-lib
>>>> sqlalchemy-migrate
>>>> svgwrite
>>>>
>>>> This should a complete list, Nate promises that there are no hidden
>>>> sub dependencies.
>>>>
>>>> They also use a custom fork of pysam
>>>>
>>>> On Mon, Jun 27, 2016 at 2:34 PM, Michael Crusoe
>>>> <michael.crusoe@gmail.com <mailto:michael.crusoe@gmail.com>> wrote:
>>>>
>>>> Hoopla,
>>>>
>>>> I'm at the Galaxy Community Conference sitting next to Nate Coraor.
>>>>
>>>> Nate is enthusiastic about Galaxy becoming properly packaged for
>>>> Debian. He is well aware of how hacky his current package is :-)
>>>>
>>>> On Thu, Jun 16, 2016 at 11:07 AM, Olivier Sallou
>>>> <olivier.sallou@irisa.fr <mailto:olivier.sallou@irisa.fr>> wrote:
>>>>
>>>>
>>>>
>>>> On 06/16/2016 08:43 AM, Michael Crusoe wrote:
>>>> >
>>>> > Vezi Tweetul lui @natefoo:
>>>> > https://twitter.com/natefoo/status/743306923026440194
>>>> >
>>>> > https://depot.galaxyproject.org/nate/dpkg/
>>>> >
>>>> nice, but easy for them. Galaxy installs many things at run
>>>> time from
>>>> remote locations (pypi and others). So not easy to fit in
>>>> Debian as all
>>>> dependencies not to be Debian packages.
>>>>
>>>> Olivier
>>>>
>>>> --
>>>> Olivier Sallou
>>>> IRISA / University of Rennes 1
>>>> Campus de Beaulieu, 35000 RENNES - FRANCE
>>>> Tel: 02.99.84.71.95
>>>>
>>>> gpg key id: 4096R/326D8438 (keyring.debian.org
>>>> <http://keyring.debian.org>)
>>>> Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB
>>>> 326D 8438
>>>>
>>>>
>>>>
>>>>
>>>> --
>>>> Michael R. Crusoe
>>>> Community Engineer & Co-founder
>>>> Common Workflow Language project
>>>> https://impactstory.org/u/0000-0002-2961-9670
>>>> michael.crusoe@gmail.com <mailto:michael.crusoe@gmail.com>
>>>> +32 (0) 2 808 25 58 <tel:%2B32%20%280%29%202%20808%2025%2058>
>>>> +1 480 627 9108 <tel:%2B1%20480%20627%209108>
>>>>
>>>>
>>>>
>>>>
>>>> --
>>>> Michael R. Crusoe
>>>> Community Engineer & Co-founder
>>>> Common Workflow Language project
>>>> https://impactstory.org/u/0000-0002-2961-9670
>>>> michael.crusoe@gmail.com <mailto:michael.crusoe@gmail.com>
>>>> +32 (0) 2 808 25 58
>>>> +1 480 627 9108
Reply to: