Re: Galaxy project producing their own Debian packages
by the way, as they are all python packages, should we handle them in
DebianMed or Python team ?
On 06/28/2016 03:20 PM, Steffen Möller wrote:
> This is great! That custom fokr of pysam reads as if one wants to avoid
> that and rather give those extra features back to everyone via upstream.
>
> I'll do bioblend and svgwrite - now.
>
> Anybody else chiming in?
>
>
> bx-python
> wchartype
> dictobj
> bioblend Steffen
> requests-toolbelt
> pulsar-galaxy-lib
> sqlalchemy-migrate
> svgwrite Steffen
>
>
> Steffen
>
>
> On 27/06/16 21:04, Michael Crusoe wrote:
>> Python packages that need packaging:
>>
>> bx-python
>> wchartype
>> dictobj
>> bioblend
>> requests-toolbelt
>> pulsar-galaxy-lib
>> sqlalchemy-migrate
>> svgwrite
>>
>> This should a complete list, Nate promises that there are no hidden
>> sub dependencies.
>>
>> They also use a custom fork of pysam
>>
>> On Mon, Jun 27, 2016 at 2:34 PM, Michael Crusoe
>> <michael.crusoe@gmail.com <mailto:michael.crusoe@gmail.com>> wrote:
>>
>> Hoopla,
>>
>> I'm at the Galaxy Community Conference sitting next to Nate Coraor.
>>
>> Nate is enthusiastic about Galaxy becoming properly packaged for
>> Debian. He is well aware of how hacky his current package is :-)
>>
>> On Thu, Jun 16, 2016 at 11:07 AM, Olivier Sallou
>> <olivier.sallou@irisa.fr <mailto:olivier.sallou@irisa.fr>> wrote:
>>
>>
>>
>> On 06/16/2016 08:43 AM, Michael Crusoe wrote:
>> >
>> > Vezi Tweetul lui @natefoo:
>> > https://twitter.com/natefoo/status/743306923026440194
>> >
>> > https://depot.galaxyproject.org/nate/dpkg/
>> >
>> nice, but easy for them. Galaxy installs many things at run
>> time from
>> remote locations (pypi and others). So not easy to fit in
>> Debian as all
>> dependencies not to be Debian packages.
>>
>> Olivier
>>
>> --
>> Olivier Sallou
>> IRISA / University of Rennes 1
>> Campus de Beaulieu, 35000 RENNES - FRANCE
>> Tel: 02.99.84.71.95
>>
>> gpg key id: 4096R/326D8438 (keyring.debian.org
>> <http://keyring.debian.org>)
>> Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB
>> 326D 8438
>>
>>
>>
>>
>> --
>> Michael R. Crusoe
>> Community Engineer & Co-founder
>> Common Workflow Language project
>> https://impactstory.org/u/0000-0002-2961-9670
>> michael.crusoe@gmail.com <mailto:michael.crusoe@gmail.com>
>> +32 (0) 2 808 25 58 <tel:%2B32%20%280%29%202%20808%2025%2058>
>> +1 480 627 9108 <tel:%2B1%20480%20627%209108>
>>
>>
>>
>>
>> --
>> Michael R. Crusoe
>> Community Engineer & Co-founder
>> Common Workflow Language project
>> https://impactstory.org/u/0000-0002-2961-9670
>> michael.crusoe@gmail.com <mailto:michael.crusoe@gmail.com>
>> +32 (0) 2 808 25 58
>> +1 480 627 9108
--
Olivier Sallou
IRISA / University of Rennes 1
Campus de Beaulieu, 35000 RENNES - FRANCE
Tel: 02.99.84.71.95
gpg key id: 4096R/326D8438 (keyring.debian.org)
Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438
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