Re: Galaxy project producing their own Debian packages
This is great! That custom fokr of pysam reads as if one wants to avoid
that and rather give those extra features back to everyone via upstream.
I'll do bioblend and svgwrite - now.
Anybody else chiming in?
bx-python
wchartype
dictobj
bioblend Steffen
requests-toolbelt
pulsar-galaxy-lib
sqlalchemy-migrate
svgwrite Steffen
Steffen
On 27/06/16 21:04, Michael Crusoe wrote:
> Python packages that need packaging:
>
> bx-python
> wchartype
> dictobj
> bioblend
> requests-toolbelt
> pulsar-galaxy-lib
> sqlalchemy-migrate
> svgwrite
>
> This should a complete list, Nate promises that there are no hidden
> sub dependencies.
>
> They also use a custom fork of pysam
>
> On Mon, Jun 27, 2016 at 2:34 PM, Michael Crusoe
> <michael.crusoe@gmail.com <mailto:michael.crusoe@gmail.com>> wrote:
>
> Hoopla,
>
> I'm at the Galaxy Community Conference sitting next to Nate Coraor.
>
> Nate is enthusiastic about Galaxy becoming properly packaged for
> Debian. He is well aware of how hacky his current package is :-)
>
> On Thu, Jun 16, 2016 at 11:07 AM, Olivier Sallou
> <olivier.sallou@irisa.fr <mailto:olivier.sallou@irisa.fr>> wrote:
>
>
>
> On 06/16/2016 08:43 AM, Michael Crusoe wrote:
> >
> > Vezi Tweetul lui @natefoo:
> > https://twitter.com/natefoo/status/743306923026440194
> >
> > https://depot.galaxyproject.org/nate/dpkg/
> >
> nice, but easy for them. Galaxy installs many things at run
> time from
> remote locations (pypi and others). So not easy to fit in
> Debian as all
> dependencies not to be Debian packages.
>
> Olivier
>
> --
> Olivier Sallou
> IRISA / University of Rennes 1
> Campus de Beaulieu, 35000 RENNES - FRANCE
> Tel: 02.99.84.71.95
>
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>
>
>
>
> --
> Michael R. Crusoe
> Community Engineer & Co-founder
> Common Workflow Language project
> https://impactstory.org/u/0000-0002-2961-9670
> michael.crusoe@gmail.com <mailto:michael.crusoe@gmail.com>
> +32 (0) 2 808 25 58 <tel:%2B32%20%280%29%202%20808%2025%2058>
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>
>
>
>
> --
> Michael R. Crusoe
> Community Engineer & Co-founder
> Common Workflow Language project
> https://impactstory.org/u/0000-0002-2961-9670
> michael.crusoe@gmail.com <mailto:michael.crusoe@gmail.com>
> +32 (0) 2 808 25 58
> +1 480 627 9108
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