Re: Galaxy project producing their own Debian packages
On 06/28/2016 04:34 PM, Olivier Sallou wrote:
> by the way, as they are all python packages, should we handle them in
> DebianMed or Python team ?
>
> On 06/28/2016 03:20 PM, Steffen Möller wrote:
>> This is great! That custom fokr of pysam reads as if one wants to avoid
>> that and rather give those extra features back to everyone via upstream.
>>
>> I'll do bioblend and svgwrite - now.
>>
>> Anybody else chiming in?
>>
>>
>> bx-python
>> wchartype
>> dictobj
>> bioblend Steffen
>> requests-toolbelt
I talked too fast, requests-toolbelt is already packaged.... ( after
having almost done the job... ). Will have a look at other packages...
>> pulsar-galaxy-lib
>> sqlalchemy-migrate
>> svgwrite Steffen
>>
>>
>> Steffen
>>
>>
>> On 27/06/16 21:04, Michael Crusoe wrote:
>>> Python packages that need packaging:
>>>
>>> bx-python
>>> wchartype
>>> dictobj
>>> bioblend
>>> requests-toolbelt
>>> pulsar-galaxy-lib
>>> sqlalchemy-migrate
>>> svgwrite
>>>
>>> This should a complete list, Nate promises that there are no hidden
>>> sub dependencies.
>>>
>>> They also use a custom fork of pysam
>>>
>>> On Mon, Jun 27, 2016 at 2:34 PM, Michael Crusoe
>>> <michael.crusoe@gmail.com <mailto:michael.crusoe@gmail.com>> wrote:
>>>
>>> Hoopla,
>>>
>>> I'm at the Galaxy Community Conference sitting next to Nate Coraor.
>>>
>>> Nate is enthusiastic about Galaxy becoming properly packaged for
>>> Debian. He is well aware of how hacky his current package is :-)
>>>
>>> On Thu, Jun 16, 2016 at 11:07 AM, Olivier Sallou
>>> <olivier.sallou@irisa.fr <mailto:olivier.sallou@irisa.fr>> wrote:
>>>
>>>
>>>
>>> On 06/16/2016 08:43 AM, Michael Crusoe wrote:
>>> >
>>> > Vezi Tweetul lui @natefoo:
>>> > https://twitter.com/natefoo/status/743306923026440194
>>> >
>>> > https://depot.galaxyproject.org/nate/dpkg/
>>> >
>>> nice, but easy for them. Galaxy installs many things at run
>>> time from
>>> remote locations (pypi and others). So not easy to fit in
>>> Debian as all
>>> dependencies not to be Debian packages.
>>>
>>> Olivier
>>>
>>> --
>>> Olivier Sallou
>>> IRISA / University of Rennes 1
>>> Campus de Beaulieu, 35000 RENNES - FRANCE
>>> Tel: 02.99.84.71.95
>>>
>>> gpg key id: 4096R/326D8438 (keyring.debian.org
>>> <http://keyring.debian.org>)
>>> Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB
>>> 326D 8438
>>>
>>>
>>>
>>>
>>> --
>>> Michael R. Crusoe
>>> Community Engineer & Co-founder
>>> Common Workflow Language project
>>> https://impactstory.org/u/0000-0002-2961-9670
>>> michael.crusoe@gmail.com <mailto:michael.crusoe@gmail.com>
>>> +32 (0) 2 808 25 58 <tel:%2B32%20%280%29%202%20808%2025%2058>
>>> +1 480 627 9108 <tel:%2B1%20480%20627%209108>
>>>
>>>
>>>
>>>
>>> --
>>> Michael R. Crusoe
>>> Community Engineer & Co-founder
>>> Common Workflow Language project
>>> https://impactstory.org/u/0000-0002-2961-9670
>>> michael.crusoe@gmail.com <mailto:michael.crusoe@gmail.com>
>>> +32 (0) 2 808 25 58
>>> +1 480 627 9108
--
Olivier Sallou
IRISA / University of Rennes 1
Campus de Beaulieu, 35000 RENNES - FRANCE
Tel: 02.99.84.71.95
gpg key id: 4096R/326D8438 (keyring.debian.org)
Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438
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