Re: [MoM] Fwd: Outreachy project (CI for all biological applications inside Debian)
Hi Tanya,
On Mon, Mar 21, 2016 at 07:31:13PM +0300, merlettaia wrote:
> I've decided to start with Concavity.
Fine.
> Is there a sample of a well-test-covered package?
I'm not sure about what is a recommended example, but here are several
packages that have tests inside packaging git if I call the following in
the dir where I keep my Debian Med Git repositories:
find . -type d -name tests | grep debian/tests | sort
./aegean/debian/tests
./artfastqgenerator/debian/tests
./art-nextgen-simulation-tools/debian/tests
./axe-demultiplexer/debian/tests
./bcftools/debian/tests
./beast2-mcmc/debian/tests
./beast-mcmc/debian/tests
./bedtools/debian/tests
./bowtie2/debian/tests
./eigensoft/debian/tests
./falconkit/debian/tests
./fast5/debian/tests
./fastaq/debian/tests
./genometools/debian/tests
./gwama/debian/tests
./jellyfish/debian/tests
./khmer/debian/tests
./kmc/debian/tests
./libcereal/debian/tests
./libtabixpp/debian/tests
./microbiomeutil/debian/tests
./miniasm/debian/tests
./minimap/debian/tests
./nanopolish/debian/tests
./partitionfinder/debian/tests
./pbbarcode/debian/tests
./pbgenomicconsensus/debian/tests
./pbsim/debian/tests
./permute/debian/tests
./pipasic/debian/tests
./plast/debian/tests
./plink1.9/debian/tests
./plink2/debian/tests
./proteinortho/debian/tests
./python-biom-format/debian/tests
./python-biopython/debian/tests
./python-cobra/debian/tests
./python-csb/debian/tests
./python-pbcommand/debian/tests
./python-pbcore/debian/tests
./python-pbh5tools/debian/tests
./python-pysam/debian/tests
./python-ruffus/debian/tests
./python-screed/debian/tests
./python-skbio/debian/tests
./r-bioc-biobase/debian/tests
./r-bioc-biocgenerics/debian/tests
./r-bioc-cummerbund/debian/tests
./r-bioc-ebseq/debian/tests
./r-bioc-edger/debian/tests
./r-bioc-limma/debian/tests
./r-cran-ggplot2/debian/tests
./r-cran-metamix/debian/tests
./r-cran-plyr/debian/tests
./r-cran-reshape2/debian/tests
./r-cran-rsqlite/debian/tests
./r-cran-scales/debian/tests
./r-cran-vegan/debian/tests
./reapr/debian/tests
./samtools/debian/tests
./snpomatic/debian/tests
./snp-sites/debian/tests
./spades/debian/tests
./spdlog/debian/tests
./subread/debian/tests
./tabix/debian/tests
./toppred/debian/tests
./transdecoder/debian/tests
./trinityrnaseq/debian/tests
./trnascan-se/debian/tests
./velvet/debian/tests
./vsearch/debian/tests
Feel free to ask for more details if this hint does not turn out has
very helpful (I'm a bit busy with real life things currently).
Hope this helps
Andreas.
--
http://fam-tille.de
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