Re: Mentioning EDAM files in DebianMed Policy
Hi again,
I'd be happy if someone would take over the job suggested by Fabian to
mention EDAM fields in our policy. I personally do not feel capable to
do this since I'm simply lacking the biologic background.
We also should have a record inside Debian Wiki to document what we drop
into the debian/upstream dir. I started creating a paragraph at
https://wiki.debian.org/UpstreamMetadata#Fields-1
but this needs enhancement! Please everybody who feels concerned about
EDAM classification try to enhance and lets not wait until next years
sprint.
Kind regards
Andreas.
On Wed, Feb 10, 2016 at 10:45:15AM +0100, jison@cbs.dtu.dk wrote:
> Folks
>
> The link to OLS was to a deprecated ontology browser running an ancient version of EDAM.
>
> Please use this one instead (it's in beta, so go steady):
> http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=EDAM
>
> Alternatively you can use this:
> http://bioportal.bioontology.org/ontologies/EDAM/
>
> ps. both now include EDAM_1.13 just released post-hackathon. Thanks for the hard work !
>
> Cheers
>
> Jon
>
>
> > Hi Fabian,
> >
> > thanks for the very helpful and needed hint. I was waiting a bit since
> > Michael intended to work on the structure of the policy a bit and I did
> > not wanted to shot on a moving target. Michael, could you comment on
> > this how and where you would like to see this information?
> >
> > Kind regards
> >
> > Andreas.
> >
> > On Sat, Feb 06, 2016 at 04:36:34PM +0100, Fabian Kl�tzl wrote:
> >> Hi all,
> >>
> >> The new edam files should also be mentioned in our team policy. Below is
> >> a quick mock up; But we might also need to write a proper spec.
> >>
> >> Best,
> >> Fabian
> >>
> >>
> >>
> >>
> >> ## debian/upstream/edam
> >>
> >> This is a machine-readable file to categorize where in life-science this
> >> package has its application. The categories themselves come from EDAM
> >> and are arranged in YAML format. Check the [EDAM Ontology
> >> Browser](http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=EDAM)
> >> for terms that might fit the package.
> >>
> >>
> >
> > --
> > http://fam-tille.de
> >
> >
>
>
>
--
http://fam-tille.de
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