Re: header package for samtools

[Afif Elghraoui <afif@ghraoui.name>]

على الأربعاء 23 كانون الأول 2015 ‫21:13، كتب Charles Plessy:
> Le Wed, Dec 23, 2015 at 08:01:07PM -0800, Afif Elghraoui a écrit :
>>
>> lofreq requires at least samtools 1.1. I did try using the libbam-dev
>> package for this, but it wasn't compatible.
>>
>> In any case, I think there is a similar situation with pysam and the
>> samtools R-bindings, but that they just distribute code copies.
> 
> how about asking to the lofreq authors if they can use the htslib directly
> instead of libbam ?
> 

They use both htslib and the samtools static libraries. I can ask to see
what can be done.

> If not, it should be easy to add a samtools-dev package as you proposed.
> 

Ok.

regards
Afif

-- 
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name