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Bug#778489: marked as done (ITP: jaligner -- implementation of the Smith-Waterman algorithm with Gotoh's improvement)

Your message dated Wed, 02 Sep 2015 11:00:12 +0000
with message-id <E1ZX5m0-0007wv-0U@franck.debian.org>
and subject line Bug#778489: fixed in jaligner 1.0+dfsg-1
has caused the Debian Bug report #778489,
regarding ITP: jaligner -- implementation of the Smith-Waterman algorithm with Gotoh's improvement
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
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misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


-- 
778489: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=778489
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Debian Med team <debian-med@lists.debian.org>
X-Debbugs-Cc: debian-devel@lists.debian.org, debian-med@lists.debian.org

* Package name    : jaligner
  Version         : 1.0
  Upstream Author : Ahmed Moustafa <ahmed@users.sf.net>
* URL             : http://jaligner.sf.net
* License         : GPL
  Programming Lang: Java
  Description     : implementation of the Smith-Waterman algorithm with Gotoh's improvement

JAligner is an open source Java implementation of the Smith-Waterman
 algorithm with Gotoh's improvement for biological local pairwise sequence
 alignment with the affine gap penalty model.

jaligner is a dependency of many bioinformatic programs including
trinityrnaseq. The packaging was started by Tim Booth and will be group
maintained by the Debian Med team.

--- End Message ---
--- Begin Message --- 
Source: jaligner
Source-Version: 1.0+dfsg-1

We believe that the bug you reported is fixed in the latest version of
jaligner, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 778489@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Michael R. Crusoe <crusoe@ucdavis.edu> (supplier of updated jaligner package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Sat, 29 Aug 2015 13:21:31 -0700
Source: jaligner
Binary: jaligner
Architecture: source all
Version: 1.0+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <crusoe@ucdavis.edu>
Description:
 jaligner   - Smith-Waterman algorithm with Gotoh's improvement
Closes: 778489
Changes:
 jaligner (1.0+dfsg-1) unstable; urgency=medium
 .
   * Initial release. (Closes: #778489)
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 b8f8fdda3b28946c6f4e140aa5a1c44935c6dcce 74741 jaligner_1.0+dfsg.orig.tar.gz
 4d21082a4ea6daec706ef2700aebff47590f5dab 7024 jaligner_1.0+dfsg-1.debian.tar.xz
 622a7e7e03a7c530d390f5969e8143c5d667c706 126952 jaligner_1.0+dfsg-1_all.deb
Checksums-Sha256:
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 c48329c7c7339fd51514099e269df609e5016a9d473af488f6173997e3a3ef92 126952 jaligner_1.0+dfsg-1_all.deb
Files:
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 aab44f2bd684c244ac964bb8e953a0f7 74741 science optional jaligner_1.0+dfsg.orig.tar.gz
 787f49327121f41c8049777d92608e8f 7024 science optional jaligner_1.0+dfsg-1.debian.tar.xz
 f87e4ef2abdb415c989f22ce695fbf3e 126952 science optional jaligner_1.0+dfsg-1_all.deb

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