Re: Need some help for Java package

[Andreas Tille <andreas@an3as.eu>]

Hi Olivier,

On Sat, Feb 08, 2014 at 09:11:15AM +0100, olivier.sallou@codeless.fr wrote:
> I've gone furher, remove cplex, but there is still an issue. Code
> references:
> 
> CigarParser.extractAllAlignDiffs()
> 
> 
> but there is no "import ...." in the code that would import CigarParser
> from a library or local code!
> and I cannot find on Internet any CigarParser class.
> 
> This is related in a way or an other to samtools, but I do not see any
> CigarParser in libsam-java.
> 
> I wonder how the source code is stable ....
> 
> Any way, does anyone has an idea where this CigarParser may come from?

I found some reference here:

   http://bioinf.hutton.ac.uk/tablet/svn.txt

which belongs to the BSD licensed

   http://bioinf.hutton.ac.uk/tablet/

which might be interesting as well and it claims to be BSD licensed but
I can not find a source download nor the SVN where the log above is from.

I'll send a mail to upstream about this

Kind regards

     Andreas.

 

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