Re: Need some help for Java package
On 02/08/2014 04:54 PM, Andreas Tille wrote:
> Hi Olivier,
>
> On Sat, Feb 08, 2014 at 09:11:15AM +0100, olivier.sallou@codeless.fr wrote:
>> I've gone furher, remove cplex, but there is still an issue. Code
>> references:
>>
>> CigarParser.extractAllAlignDiffs()
>>
>>
>> but there is no "import ...." in the code that would import CigarParser
>> from a library or local code!
>> and I cannot find on Internet any CigarParser class.
>>
>> This is related in a way or an other to samtools, but I do not see any
>> CigarParser in libsam-java.
>>
>> I wonder how the source code is stable ....
>>
>> Any way, does anyone has an idea where this CigarParser may come from?
> I found some reference here:
>
> http://bioinf.hutton.ac.uk/tablet/svn.txt
>
> which belongs to the BSD licensed
>
> http://bioinf.hutton.ac.uk/tablet/
>
> which might be interesting as well and it claims to be BSD licensed but
> I can not find a source download nor the SVN where the log above is from.
>
> I'll send a mail to upstream about this
Anyway, giira have this code (at least the one class they use), to
compile their program.
They should include the code or link to the used libraries.
Olivier
>
> Kind regards
>
> Andreas.
>
>
>
>
> --
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