Re: Java help for beast needed

[Olivier Sallou <olivier.sallou@irisa.fr>]

Le 6/6/12 2:16 PM, Andreas Tille a écrit :
> On Wed, Jun 06, 2012 at 08:33:49AM +0200, Olivier Sallou wrote:
>>>> Any idea? (You can get the upstream source tarball via
>>> After a look, it appears that beagle package  (beagle/beagle.java) does
>>> not provide method
>>>
>>> convolveTransitionMatrices
>>>
>>>
>>> So I think there is a version issue between beagle and beast-mcmc use of
>>> beagle (too recent or not recent enough)
>>> Olivier
>> It is available is Beast 1.1, you should upgrade package first...  :-(
> Hmmm, if I'm using
>  
>      uscan --verbose --force-depends
>
> I get an orig.source.gz containing:
>
> $ ls libhmsbeagle-1.1/java/beagle/
> BeagleErrorCode.java  BeagleInfo.java        DependencyAwareBeagleImpl.java  ResourceDetails.java
> BeagleException.java  Beagle.java            FourStateBeagleImpl.java
> BeagleFactory.java    BeagleJNIImpl.java     GeneralBeagleImpl.java
> BeagleFlag.java       BeagleJNIWrapper.java  InstanceDetails.java
> $ grep -R convolveTransitionMatrices libhmsbeagle-1.1
> $
>
> So from my perspective there is no such method convolveTransitionMatrices.
>
> How exactly did you got a tarball containing this method?  Straight
> checkout form SVN?
I just browsed the SVN directory, I did not download it.
>
> Kind regards
>
>       Andreas.
>

-- 
Olivier Sallou
IRISA / University of Rennes 1
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