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Re: Packaging of cd-hit for Debian

Andreas,
In the cd-hit 4.5.7, which was just uploaded to http://code.google.com/p/cdhit/, a new license file was added into the package. I can also confirm here the license for cd-hit is GLPv2.
As for the user documentation, the most up-to-date document is actual a wiki page at: http://weizhong-lab.ucsd.edu/cd-hit/wiki/doku.php?id=cd-hit_user_guide. 

Should this be ok? if not, please just let me know,

Thanks,
Weizhong,



On 12/15/11 1:08 AM, Andreas Tille wrote:

Hi Weizhong,

I intend to package cd-hit for Debian on behalf of the Debian Med team
as an extension for the qiime package.  I hope you like this.

The packaging process went smoothly but there is one problem with the
user documentation in PDF format only (cdhit-user-guide.pdf):  Our
ftpmasters are requesting the source of such documents (as for any
binary chunks in the package) and also the confirmation that the license
of the code es also valid for the documentation.

Could you provide something like this?

Kind regards

        Andreas.


----- Forwarded message from Andreas Tille<tille@debian.org>  -----

Date: Wed, 14 Dec 2011 17:00:01 +0100
From: Andreas Tille<tille@debian.org>
To: Debian Bug Tracking System<submit@bugs.debian.org>
Subject: Bug#652074: ITP: cd-hit -- suite of programs designed to quickly group sequences

Package: wnpp
Severity: wishlist
Owner: Andreas Tille<tille@debian.org>

* Package name    : cd-hit
   Version         : 4.5.6
   Upstream Author : Weizhong Li<liwz@sdsc.edu>
* URL             : http://weizhong-lab.ucsd.edu/cd-hit/
* License         : GPLv2
   Programming Lang: C++, Perl
   Description     : suite of programs designed to quickly group sequences
  cd-hit contains a number of programs designed to quickly group
  sequences. cd-hit groups proteins into clusters that meet a user-defined
  similarity threshold. cd-hit-est is similar to cd-hit, but designed to
  group nucleotide sequences (without introns). cd-hit-est-2d is similar
  to cd-hit-2d but designed to compare two nucleotide datasets. A number
  of other related programs are also in this package. Please see the
  cd-hit user manual, also part of this package, for further information.


The packaging is done in the Debian Med team and is available in Debian
Med SVN at

    Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/cd-hit/trunk/

The only remaining issue is to clarify source + copyright of the included
PDF documentation.

This WNPP bug solves also bug #651983 - qiime: Recommends: not available
'cd-hit' package.


----- End forwarded message -----
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