Re: cufflinks package is ready for upload
On 12/11/2011 04:52 AM, Charles Plessy wrote:
> Le Sun, Dec 11, 2011 at 12:07:46AM +0900, Charles Plessy a écrit :
>
>> It is a bit late so I will not upload this night, but if nobody sends a patch
>> until tomorrow morning, I will upload the package as it is. Let's ask Upstream
>> to replace locfit, which is also the cause for cufflinks to be non-free, and
>> turn the dpkg-buildflags on later.
>>
> Good morning :)
>
>
Hi Charles ,
> I uploaded cufflinks, after turning on xz compression for the binary package as
> it saves half of the space.
>
>
Nice , good to know !
> For the packages I maintain in Git, I usually store the build logs in a special
> branch (http://charles.plessy.org/Debian/debiâneries/tout-dans-git). Would you
> like me to do so for cufflinks ? I am currently exploring on off-line packages
> if it is practical to have each architecture log in a separate branch, for
> easier comparisons. Can I try this with cufflinks as well ?
>
Sure , please do as you like .
> Next step, apart from contacting cufflinks authors about locfit, is probably to
> package Tophat for having the full toolchain. I see a package in Carlos J
> Borroto's personal package archive on Launchpad. There is probably a good synergy
> to have there (and samtools/bam.h patches to share ?).
>
> https://launchpad.net/~cjav/+archive/biotools/+packages
>
I'll have a look on tophat this week .
About locfit , it seems to be quite popular algorithm and to be honest I
don't believe that upstream will change it .
But I'll try to get in touch with authors .
> Have a nice Sunday,
>
>
Have a nice Monday !
Alex
Reply to: