Re: MAKER - genome annotation - we almost have it all
Le Thu, Jun 16, 2011 at 12:11:44PM +0200, Steffen Möller a écrit :
> surprise we don't have RepeatMasker.
RepeatMasker seems to need Tandem repeats finder
(http://tandem.bu.edu/trf/trf.html), which is apparently closed source. In the
worst case, one could make a wrapper à la flashplugin-nonfree…
For BioPerl, last year I have promised to the Perl team to split it between
libbio-perl-perl, that will containt the modules, and bioperl, that will
contain the rest.
If possible, I would like to take the opportunity of the new BioPerl upstream
release to do such ground work, but if I am being a bottleneck, this can be
Debian Med packaging team,
Tsurumi, Kanagawa, Japan