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Debian on SS400-E

I have a confusion about installing Debian on this NAS device. I'd like to do 
that and there are instructions on the list to follow but I don't want to 
remove the usual NAS functionality.

My question is: will updating the firmware also remove the stock web interface 
and functionality?

The end result I'm trying to achieve is a NAS functioning as normal but also 
with Debian so I can add further functions such as Apache.

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