Bug#827992: ITP: phipack -- PHI test and other tests of recombination
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille@debian.org>
* Package name : phipack
Version : 0.0.20160614
Upstream Author : David Bryant <david.bryant@otago.ac.nz>
* URL : http://www.maths.otago.ac.nz/~dbryant/software/PhiPack.tar.gz
* License : LGPL
Programming Lang: C
Description : PHI test and other tests of recombination
The PhiPack software package implements a few tests for recombination
and can produce refined incompatibility matrices as well. Specifically,
PHIPack implements the 'Pairwise Homoplasy Index', Maximum Chi2 and the
'Neighbour Similarity Score'. The program Phi can be run to produce a
p-value of recombination within a data set and the program profile can
be run to determine regions exhibiting strongest evidence mosaicism.
Remark: This package is a precondition for a Debian Med package (parsnp)
and will be maintained by the Debian Med team at
https://anonscm.debian.org/git/debian-med/phipack.git
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