Bug#783101: ITP: mauvealigner -- multiple genome alignment algorithms
Hi,
in
https://lists.debian.org/debian-med/2015/05/msg00151.html
it was decided to name the package progressivemauve. I'll ask for
removal from new queue with the old name and upload with the new
name.
Kind regards
Andreas.
On Wed, Apr 22, 2015 at 11:03:25AM +0200, Andreas Tille wrote:
> Package: wnpp
> Severity: wishlist
> Owner: Andreas Tille <tille@debian.org>
>
> * Package name : mauvealigner
> Version : 1.2.0+4713
> Upstream Author : Aaron Darling <darling@cs.wisc.edu>
> * URL : http://sourceforge.net/p/mauve/code/HEAD/tree/mauveAligner/
> * License : GPL
> Programming Lang: C++
> Description : multiple genome alignment algorithms
> The mauveAligner and progressiveMauve alignment algorithms have been
> implemented as command-line programs included with the downloadable Mauve
> software. When run from the command-line, these programs provide options
> not yet available in the graphical interface.
> .
> Mauve is a system for efficiently constructing multiple genome alignments
> in the presence of large-scale evolutionary events such as rearrangement
> and inversion. Multiple genome alignment provides a basis for research
> into comparative genomics and the study of evolutionary dynamics. Aligning
> whole genomes is a fundamentally different problem than aligning short
> sequences.
> .
> Mauve has been developed with the idea that a multiple genome aligner
> should require only modest computational resources. It employs algorithmic
> techniques that scale well in the amount of sequence being aligned. For
> example, a pair of Y. pestis genomes can be aligned in under a minute,
> while a group of 9 divergent Enterobacterial genomes can be aligned in
> a few hours.
> .
> Mauve computes and interactively visualizes genome sequence comparisons.
> Using FastA or GenBank sequence data, Mauve constructs multiple genome
> alignments that identify large-scale rearrangement, gene gain, gene loss,
> indels, and nucleotide substutition.
> .
> Mauve is developed at the University of Wisconsin.
>
> Remark: This package is maintained by the Debian Med team at
> Vcs-Git: git://anonscm.debian.org/debian-med/mauvealigner.git
>
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