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Bug#737099: marked as done (ITP: mapsembler2 -- bioinformatics targeted assembly software)

Your message dated Wed, 05 Feb 2014 16:00:10 +0000
with message-id <E1WB4tW-0000gl-Jh@franck.debian.org>
and subject line Bug#737099: fixed in mapsembler2 2.0.5+dfsg-1
has caused the Debian Bug report #737099,
regarding ITP: mapsembler2 -- bioinformatics  targeted assembly software
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
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-- 
737099: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=737099
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: Olivier Sallou <olivier.sallou@irisa.fr>

* Package name    : mapsembler2
  Version         : 2.0.5
  Upstream Author : INRIA
* URL             : https://colibread.inria.fr/mapsembler2/
* License         : CeCILL
  Programming Lang: C
  Description     : bioinformatics  targeted assembly software

Mapsembler2 is a targeted assembly software. It takes as input a set of NGS raw reads (fasta or fastq, gzipped or not) and a set of input sequences (starters). It first determines if each starter is read-coherent, e.g. whether reads confirm the presence of each starter in the original sequence. Then for each read-coherent starter, Mapsembler2 outputs its sequence neighborhood as a linear sequence or as a graph, depending on the user choice.
Mapsembler2 may be used for (not limited to):
· Validate an assembled sequence (input as starter), e.g. from a de Bruijn graph assembly where read-coherence was not enforced.
· Checks if a gene (input as starter) has an homolog in a set of reads
· Checks if a known enzyme is present in a metagenomic NGS read set.
· Enrich unmappable reads by extending them, possibly making them mappable
· Checks what happens at the extremities of a contig
· Remove contaminants or symbiont reads from a read set

--- End Message ---
--- Begin Message --- 
Source: mapsembler2
Source-Version: 2.0.5+dfsg-1

We believe that the bug you reported is fixed in the latest version of
mapsembler2, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 737099@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Olivier Sallou <osallou@debian.org> (supplier of updated mapsembler2 package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Sat, 01 Feb 2014 16:55:29 +0100
Source: mapsembler2
Binary: mapsembler2
Architecture: source amd64
Version: 2.0.5+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Olivier Sallou <osallou@debian.org>
Description: 
 mapsembler2 - bioinformatics targeted assembly software
Closes: 737099
Changes: 
 mapsembler2 (2.0.5+dfsg-1) unstable; urgency=medium
 .
   * First debian package (Closes: #737099).
Checksums-Sha1: 
 a03edb895f544b6270daceb013d83aaa7d8ffca2 2031 mapsembler2_2.0.5+dfsg-1.dsc
 524ec3aa708cd18b84ff2cde4cee0ede90ea9898 232544 mapsembler2_2.0.5+dfsg.orig.tar.xz
 4b35621ab59a9d37b8abc1fde5bec0c4ff6ed38c 11364 mapsembler2_2.0.5+dfsg-1.debian.tar.xz
 578befa5a4902162aeef82bb1c6dfb350594f48c 309524 mapsembler2_2.0.5+dfsg-1_amd64.deb
Checksums-Sha256: 
 83a6240f83897b1833343bf2146248ebf28e21bc0c8a80340228d2b01b74edf9 2031 mapsembler2_2.0.5+dfsg-1.dsc
 4801ddacbe9ffd5ba003c42882c5498bdb4630e3731fc28df6eb6d1c362f6bbb 232544 mapsembler2_2.0.5+dfsg.orig.tar.xz
 7ecfad4e1545c94cabc1d6731709fc0f712bbd5264244cd24a0d173729557772 11364 mapsembler2_2.0.5+dfsg-1.debian.tar.xz
 cc110b2476c7661fadafbc9171af88ed707ad880ae658f21d2ae33ac310a4672 309524 mapsembler2_2.0.5+dfsg-1_amd64.deb
Files: 
 5157e58b2f5dbdc9a7afc68705571268 2031 science optional mapsembler2_2.0.5+dfsg-1.dsc
 71da21ea1b06917dfda8593e3089a9c3 232544 science optional mapsembler2_2.0.5+dfsg.orig.tar.xz
 5fd015b36eec0e9afec9f0f01e4105f9 11364 science optional mapsembler2_2.0.5+dfsg-1.debian.tar.xz
 9da929cb601c0ddaca1b3191e5f30167 309524 science optional mapsembler2_2.0.5+dfsg-1_amd64.deb

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