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Bug#737098: marked as done (ITP: discosnp -- discovering Single Nucleotide Polymorphism (SNP) from raw set(s) of reads obtained with Next Generation Sequencers)

Your message dated Wed, 05 Feb 2014 16:00:06 +0000
with message-id <E1WB4tS-0000eO-Uz@franck.debian.org>
and subject line Bug#737098: fixed in discosnp 1.0.1-1
has caused the Debian Bug report #737098,
regarding ITP: discosnp -- discovering Single Nucleotide Polymorphism (SNP) from raw set(s) of reads obtained with Next Generation Sequencers
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
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misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


-- 
737098: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=737098
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: Olivier Sallou <olivier.sallou@irisa.fr>

* Package name    : discosnp
  Version         : 1.0.1
  Upstream Author : INRIA
* URL             : http://colibread.inria.fr/discosnp/
* License         : CeCILL
  Programming Lang: C
  Description     : discovering Single Nucleotide Polymorphism (SNP) from raw set(s) of reads obtained with Next Generation Sequencers

Software discoSnp is designed for discovering Single Nucleotide Polymorphism (SNP) from raw set(s) of reads obtained with Next Generation Sequencers (NGS).
Note that number of input read sets is not constrained, it can be one, two, or more. Note also that no other data as reference genome or annotations are needed.
The software is composed by two modules. First module, kissnp2, detects SNPs from read sets. A second module, kissreads, enhance the kissnp2 results by computing per read set  and for each found SNP i/ its mean read coverage and ii/ the (phred) quality of reads generating the polymorphism.

--- End Message ---
--- Begin Message --- 
Source: discosnp
Source-Version: 1.0.1-1

We believe that the bug you reported is fixed in the latest version of
discosnp, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 737098@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Olivier Sallou <osallou@debian.org> (supplier of updated discosnp package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Sat, 01 Feb 2014 16:55:29 +0100
Source: discosnp
Binary: discosnp
Architecture: source amd64
Version: 1.0.1-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Olivier Sallou <osallou@debian.org>
Description: 
 discosnp   - discovering Single Nucleotide Polymorphism from raw set(s) of rea
Closes: 737098
Changes: 
 discosnp (1.0.1-1) unstable; urgency=low
 .
   * First debian package (Closes: #737098).
Checksums-Sha1: 
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 d2afcb9d044365ea5a4946a6bc5718b9f2e59fb7 463788 discosnp_1.0.1.orig.tar.xz
 7090ce48aaf5e2b5a3a82291fe083122793fe0fa 11112 discosnp_1.0.1-1.debian.tar.xz
 61276452780a9c68c805196fd53a91d9fc301c09 138128 discosnp_1.0.1-1_amd64.deb
Checksums-Sha256: 
 2c2a19af72bd4612faf1993537c641bfd1a2f63cf7f8cd574c8124e34fdc01d3 1960 discosnp_1.0.1-1.dsc
 78c18053b5d9f67ed7b2fe0661da8c3526e857386d63fc9449800cc53b71c7ec 463788 discosnp_1.0.1.orig.tar.xz
 c4673dc4c5921c89b77c05244ab1f6d48c9397896d294870b424d1a792a981ab 11112 discosnp_1.0.1-1.debian.tar.xz
 81b570a85e0dbeaebd28f98f42702ffa3390035cfc0e8d3559a917a38ed45184 138128 discosnp_1.0.1-1_amd64.deb
Files: 
 c480e1df1e2f0b0042cfc61571faa866 1960 science optional discosnp_1.0.1-1.dsc
 3a7887f4ba152e74c7893905e95f1d66 463788 science optional discosnp_1.0.1.orig.tar.xz
 7c9b8143e2629abce4cdb751b93d3fa3 11112 science optional discosnp_1.0.1-1.debian.tar.xz
 2a6ad3ee0f1e1f2f4a9116370049123e 138128 science optional discosnp_1.0.1-1_amd64.deb

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--- End Message ---
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