Bug#723771: marked as done (ITP: python-freecontact -- fast protein contact predictor - binding for Python)
Your message dated Sat, 21 Sep 2013 04:00:17 +0000
with message-id <E1VNEMj-0004l0-Gs@franck.debian.org>
and subject line Bug#723771: fixed in python-freecontact 1.1-1
has caused the Debian Bug report #723771,
regarding ITP: python-freecontact -- fast protein contact predictor - binding for Python
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)
--
723771: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=723771
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan <lkajan@debian.org>
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
* Package name : python-freecontact
Version : 1.1
Upstream Author : Laszlo Kajan <lkajan@rostlab.org>
* URL : http://rostlab.org/
* License : GPL-3+
Programming Lang: C++, Python
Description : fast protein contact predictor - binding for Python
FreeContact is a protein residue contact predictor optimized for speed.
Its input is a multiple sequence alignment. FreeContact can function as an
accelerated drop-in for the published contact predictors
EVfold-mfDCA of DS. Marks (2011) and
PSICOV of D. Jones (2011).
FreeContact is accelerated by a combination of vector instructions, multiple
threads, and faster implementation of key parts.
Depending on the alignment, 8-fold or higher speedups are possible.
A sufficiently large alignment is required for meaningful results.
As a minimum, an alignment with an effective (after-weighting) sequence count
bigger than the length of the query sequence should be used. Alignments with
tens of thousands of (effective) sequences are considered good input.
jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite
can be used to generate the alignments, for example.
This package contains the Python binding.
-----BEGIN PGP SIGNATURE-----
Version: GnuPG v1.4.14 (GNU/Linux)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=yzVT
-----END PGP SIGNATURE-----
--- End Message ---
--- Begin Message ---
Source: python-freecontact
Source-Version: 1.1-1
We believe that the bug you reported is fixed in the latest version of
python-freecontact, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 723771@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Laszlo Kajan <lkajan@debian.org> (supplier of updated python-freecontact package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Wed, 17 Jul 2013 19:03:32 +0200
Source: python-freecontact
Binary: python-freecontact
Architecture: source amd64
Version: 1.1-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Laszlo Kajan <lkajan@debian.org>
Description:
python-freecontact - fast protein contact predictor - binding for Python
Closes: 723771
Changes:
python-freecontact (1.1-1) unstable; urgency=low
.
* Initial release (Closes: #723771).
Checksums-Sha1:
1eb71f4495e3e3cbe5eb22eeee2e879e53d963b7 2082 python-freecontact_1.1-1.dsc
18a0f44daa9d1a10cdcce0e48cf7b0d914228868 65968 python-freecontact_1.1.orig.tar.gz
f0445038ae90df2fa04d404442c22e0b03c82978 2690 python-freecontact_1.1-1.debian.tar.gz
1507b1d5aed3e226630fbd36dd45e0e19d9bc0d4 103518 python-freecontact_1.1-1_amd64.deb
Checksums-Sha256:
a0563d140d6d1d76b099097f968c8b8eeecfa6366b7d087199dcb79ef4ccacac 2082 python-freecontact_1.1-1.dsc
895e06aa9f7878f7fff34b8f851ee361967a3cc1f3b441de32dbcbf1f31aaa85 65968 python-freecontact_1.1.orig.tar.gz
0356a452e698126aab8a750f1efe56de524208c0a46a7e960180e8468fda019d 2690 python-freecontact_1.1-1.debian.tar.gz
05e95d3cdbd3d954fe18b2fcde8f6d58b3883f1221a62480cecce9ea38522c53 103518 python-freecontact_1.1-1_amd64.deb
Files:
96169bf34f5e1cbfc9e0fdd3c5edc299 2082 python extra python-freecontact_1.1-1.dsc
17a99d6514c125b4005f0cd494ae81a4 65968 python extra python-freecontact_1.1.orig.tar.gz
908e6fa8d9be0135986370d8877dc351 2690 python extra python-freecontact_1.1-1.debian.tar.gz
c8ae9f03764cf8dbde9cd6cb111d85b0 103518 python extra python-freecontact_1.1-1_amd64.deb
-----BEGIN PGP SIGNATURE-----
Version: GnuPG v1.4.14 (GNU/Linux)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=S7wW
-----END PGP SIGNATURE-----
--- End Message ---
Reply to: