Bug#723747: marked as done (ITP: libfreecontact-perl -- fast protein contact predictor - binding for Perl)
Your message dated Sat, 21 Sep 2013 04:00:25 +0000
with message-id <E1VNEMr-0004rk-LC@franck.debian.org>
and subject line Bug#723747: fixed in libfreecontact-perl 0.08-1
has caused the Debian Bug report #723747,
regarding ITP: libfreecontact-perl -- fast protein contact predictor - binding for Perl
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
723747: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=723747
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan <lkajan@debian.org>
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
* Package name : libfreecontact-perl
Version : 0.08
Upstream Author : Laszlo Kajan <lkajan@rostlab.org>
* URL : http://rostlab.org/
* License : GPL-1+ or Artistic
Programming Lang: C, Perl
Description : fast protein contact predictor - binding for Perl
FreeContact is a protein residue contact predictor optimized for speed.
Its input is a multiple sequence alignment. FreeContact can function as an
accelerated drop-in for the published contact predictors
EVfold-mfDCA of DS. Marks (2011) and
PSICOV of D. Jones (2011).
.
FreeContact is accelerated by a combination of vector instructions, multiple
threads, and faster implementation of key parts.
Depending on the alignment, 8-fold or higher speedups are possible.
.
A sufficiently large alignment is required for meaningful results.
As a minimum, an alignment with an effective (after-weighting) sequence count
bigger than the length of the query sequence should be used. Alignments with
tens of thousands of (effective) sequences are considered good input.
.
jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite
can be used to generate the alignments, for example.
.
This package contains the Perl binding.
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--- End Message ---
--- Begin Message ---
Source: libfreecontact-perl
Source-Version: 0.08-1
We believe that the bug you reported is fixed in the latest version of
libfreecontact-perl, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 723747@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Laszlo Kajan <lkajan@rostlab.org> (supplier of updated libfreecontact-perl package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Thu, 19 Sep 2013 15:46:28 +0200
Source: libfreecontact-perl
Binary: libfreecontact-perl
Architecture: source amd64
Version: 0.08-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Laszlo Kajan <lkajan@rostlab.org>
Description:
libfreecontact-perl - fast protein contact predictor - binding for Perl
Closes: 723747
Changes:
libfreecontact-perl (0.08-1) unstable; urgency=low
.
* Initial release (Closes: #723747).
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