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Bug#482555: marked as done (RFP: patman -- DNA pattern matcher for short sequences)

Your message dated Tue, 25 May 2010 23:11:13 +0900
with message-id <20100525141113.GA8722@kunpuu.plessy.org>
and subject line Re: Bug#482555: patman: changing back from ITP to RFP
has caused the Debian Bug report #482555,
regarding RFP: patman -- DNA pattern matcher for short sequences
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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-- 
482555: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=482555
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: Charles Plessy <plessy@debian.org>

  Package name    : patman
  Version         : 1.2
  Upstream Author : Kay Pruefer <pruefer@eva.mpg.de>, Udo Stenzel <udo_stenzel@eva.mpg.de>
  URL             : http://bioinf.eva.mpg.de/patman/
  License         : GPL-2+
  Programming Lang: C++
  Description     : rapid alignment of short sequences to large databases

 Patman searches for short patterns in large DNA databases, allowing
 for approximate matches. It is optimized for searching for many small
 pattern at the same time, for example microarray probes.
 .
 Patman was published in: Bioinformatics. 2008 May 8, Prüfer K,
 Stenzel U, Dannemann M, Green RE, Lachmann M, Kelso J.

This is a small pacakage (one binary and one manpage) that is almost
ready. I will commit in Debian-Med's repository by Monday.

--- End Message ---
--- Begin Message --- 
Compared to other aligners like bowtie or bwa, patman did not meet much success
(for instance, the reference article is only cited three times). I will not
finish the packaging, unless I get a user request.

-- 
Charles Plessy
Debian Med packaging team
Tsurumi, Kanagawa, Japan

--- End Message ---
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