Bug#425111: ITP: ssaha -- Sequence Search and Alignment by Hashing Algorithm
Package: wnpp
Severity: wishlist
Owner: Charles Plessy <charles-debian-nospam@plessy.org>
Package name : ssaha
Version : 3.3
Upstream Author : Anthony J. Cox <anthony.j.cox@talk21.com>
URL : http://groups.yahoo.com/group/ssahausers/files/ssaha_v33.tar.gz
License : GPL
Programming Lang: C++
Description : Sequence Search and Alignment by Hashing Algorithm
SSAHA is a software tool for very fast matching and alignment of DNA
sequences. It achieves its fast search speed by converting sequence
information into a `hash table' data structure, which can then be
searched very rapidly for matches. It was published by Ning Z,
Cox AJ, Mullikin JC in Genome Res. 2001;11;1725-9.
.
Homepage: http://www.sanger.ac.uk/Software/analysis/SSAHA/
SSAHA is the only free software of its category (fast search of nearly
indentical sequences). The popular alternative, BLAT, is restricted to
non-commercial use.
Only version 3.3 can be build with gcc 4.1 ; it was released on the
SSAHA users mailing list, hence the strange URL.
I will first finish the work on two other ITPs (mirbase, mafft) before
undertaking this one. Do not hesitate to hijack it if you want to get
things done faster !
-- System Information:
Debian Release: 4.0
APT prefers testing
APT policy: (500, 'testing'), (500, 'stable'), (1, 'experimental')
Architecture: powerpc (ppc64)
Shell: /bin/sh linked to /bin/bash
Kernel: Linux 2.6.18-4-powerpc64
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8)
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