Bug#321180: ITP: sim4 -- tool for aligning cDNA and genomic DNA [med-bio]

["Nelson A. de Oliveira" <naoliv@biolinux.df.ibilce.unesp.br>]

Package: wnpp
Severity: wishlist
Owner: "Nelson A. de Oliveira" <naoliv@biolinux.df.ibilce.unesp.br>


* Package name    : sim4
  Version         : 2003.09.21
  Upstream Author : Liliana Florea <florea@gwu.edu>
* URL             : http://www.bx.psu.edu/miller_lab/
* License         : GPL
  Description     : tool for aligning cDNA and genomic DNA [med-bio]

 sim4 is a similarity-based tool for aligning an expressed DNA sequence
 (EST, cDNA, mRNA) with a genomic sequence for the gene. It also detects
 end matches when the two input sequences overlap at one end (i.e., the
 start of one sequence overlaps the end of the other).

-- System Information:
Debian Release: testing/unstable
  APT prefers unstable
  APT policy: (990, 'unstable'), (500, 'testing'), (1, 'experimental')
Architecture: i386 (i686)
Shell:  /bin/sh linked to /bin/bash
Kernel: Linux 2.6.12-rc6-mm1
Locale: LANG=pt_BR, LC_CTYPE=pt_BR (charmap=ISO-8859-1) (ignored: LC_ALL set to pt_BR)